Detail information of BGIOSGA014577_circ_g.8


General Information
CircRNA Name BGIOSGA014577_circ_g.8
ID in PlantcircBase osi_circ_014638
Alias Chr04:28404794_28405645(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26623227-26624084  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014577
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA014577-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTATAAATCAAAACCTCCAAAATCCATTCTGGCCATTCTGAAATTGAGGTCATCGTGGTTCT
ATTCTCTGGATGACTGCAAGCCAAAAACAGAAGATCcctggacttgaagttctctggcagaaaa
atcaagcagaccgcctagcaatctcctttttaaaattggcaatgattcttcccgtctaaaagaa
cataagtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGACTTGAAGTTCTCTGGCAGAAAAATCAAGCAGACCGCCTAGCAATCTCCTTTTTAAAAT
TGGCAATGATTCTTCCCGTCTAAAAGAACATAAGTGCCATATTGTTATAAAAGGAGCAAGATAA
TAATGCCACAAGTAAAAAGGCCAGAAAAATTGCAGAGAAAATGACTCTTTCTCTATCTAAGCCA
ATTGCCAATTTCAGGTCAAAACTCCTCACGCATTCCCTCTGCTAGCCTGCACACAGAAGGGAGC
ACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACCTGATTCTTTGGTCTCCTGTGC
TAGATCCTCCAACCATTGAAAGCCACTCTGCACAATGAATTGTTGCTTCCACATCCTAAATTGT
CACAGCAACAACAAAATTATGAGGAAATAGGCCAAAATCAGCAATGATACAAGCATCACAAACA
CAAATAAGAGAGGAAGGTTGGGATGGCAACAGCGGAAAAGATTTTCTGCATAGGATGCTCTACA
AAAGAAAAATAGCTTGCCTTCCACCCATCTTTTTGCCGCATTGAATGCTCCAACATGATAATCA
GGAAATTGTGTATGAGGTCTTCAATATCACCAATGCTTATGCCATCAGCATATTTCTTAGCACC
CATCTATAATTAGAAATTTGTGAATTAGATCAATGGGTAGTGGACAGCACAAAATGTAGCATGA
TTCTTCTTGCAATATATTCTGACATAAAAAAAAGGCCTACGATACTTACCTCATGATTATAAAT
CAAAACCTCCAAAATCCATTCTGGCCATTCTGAAATTGAGGTCATCGTGGTTCTATTCTCTGGA
TGACTGCAAGCCAAAAACAGAAGATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021