Detail information of BGIOSGA016249_circ_g.1


General Information
CircRNA Name BGIOSGA016249_circ_g.1
ID in PlantcircBase osi_circ_014288
Alias Chr04:19118899_19120144(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16270218-16271463  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016249
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016249-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGACACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATT
TTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGgtagacgcatactggcgatattgctgat
ttcatccggaaggaggtttccctgccacctgtattgattggacattcatttggaggcttgattg
tgcagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGACGCATACTGGCGATATTGCTGATTTCATCCGGAAGGAGGTTTCCCTGCCACCTGTATTG
ATTGGACATTCATTTGGAGGCTTGATTGTGCAGCAATATATATCTTGTTTGGGAGGTATGCCCT
CTCAATGATCGGAAAAATTCCTGTAACCTATGTATTAAACCTGGTGATTCTTTGTGTTCTTAAT
ATTTTTCAGTTCTTCTTAACTGAATTTTCATCATCAAGAGCCTTAAAAGTTCCAATCACATAGA
TATGCCAAACTGCCAATTACTATAAGGTTTCTCAATGGATTCTTGATTACTTAAATTAGTAATA
AAAAATGTGAGTTATTCTGTGAACTGAAGGGAATGAGTGGTAGTGGTACTGGTACCTATGTTCT
GATGTAGCAGCTTATGGTCTGAGCTTGTGGCAGTAATAGTCGTTTTATTTCATGCAAAAGTTAA
TCATTATTAACTTTTTTATTCCAAGGTTCAGAACTTCTGCATCCAAAGCTTGCTGGTGCTGTTC
TTGTATGCTCTGTGCCTCCCTCAGGAAATAGGTATTTCTCATCTAACTCACTGCAATGTTACAT
CTTTGTCTTACATAACTGGGTTTAACTCCTTTGTGTTATCTATCTACAGTGGGTTGGTGTGGCG
TTACCTTTTGACCAAACCAGTTGCTGCCATCAAGGTAAATTAACCTGATCTTTATCACTTGGCT
CTCTTGAAATTCCATTCATTTTATCCTCTCGTGGAATTATGCTGAAACATTTATCCATTCCTGC
CAATCACCTTTTTTTTATATATTTAAACTTCCTGCCAGTCACTTAACTACTTATACTACTATGC
AACATGTGTCCTCCTTGTTGTTCAAGGAAATATAAGCAACCTATAATTAGATAAACTTTGTCAT
ATTAATGTGGTTGGTTTGGCTATGTAGTACCATGCTTACGTCTTGCTGGTAATCTGTTCACCTT
GTTTCATAGCTTTGAACCCCTGATTCATCATTCCATTTTACAAATTATTATGTTAATAAGCAGT
CGACTGCTATTGATATCACAATTATGGTCATCCACACCCAGAAGTGTATATGCCTCCTCATGCT
GTTTGCAATTCCTTTATGCATTGTTGATGATATGTGAAATCTTAAGCATCTTTGAATCAGGTGA
CACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTC
GCCAGAGATGGATGATGACCTGGTCCAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021