Detail information of BGIOSGA023723_circ_g.2


General Information
CircRNA Name BGIOSGA023723_circ_g.2
ID in PlantcircBase osi_circ_017479
Alias Chr07:28734082_28735342(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 26617938-26619198  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA023723
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023723_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA023723-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACAGCAATTGCCTTATTCTTCTTTTTGAAATGCTTATAATATTGTCTAGCTAATAAGTTGGC
ATCATGCTGTTCCATTCCCAACAGCCATATGTCTGCcctgcaatatctcgttcaatgacttttc
aagggccagcttcacatcagcaggatgcagagcgccactttcataatcagctgtaagttcctcc
atgctcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAATATCTCGTTCAATGACTTTTCAAGGGCCAGCTTCACATCAGCAGGATGCAGAGCGCC
ACTTTCATAATCAGCTGTAAGTTCCTCCATGCTCAGAAAAGTCCTAAACAAGATAGAAGTAATC
ACAAACCATAGAATAAAAGCATACAAATATAATGCATGATTACGTTATATGATTTAGTTGTGAA
TTGTTAGGTATTGATGACACCGACAGGACAAAACAATTGTACTAATACTGTTAAATTGTAAAAT
TAAGATTTGTCCAGAAATCTGCGGAAGTGACTCTGCAACTTCTTACTTTTTGCCACCATTCCCT
TTCTTCTGGACCACCTCAAACATTCCAAACCAAGGCAAGATGATATATTTTATGTACTCCAAAC
ATGGATTGCCTTCTGCTAGTTTTGGAGGGCAGAAAGCTTTTTCCATTTTAAAACATATATCCTC
CTGAAATATACAACAGGTAAATATTGAACAATCTCCATTGTCAACCTTCAAACAATAACTAATG
ATTTCGCCAAAACATCGATCAGACGATGAGCTGCATAAGGTAGCATATTTCAACAACTCTATGG
TCACACTGATTGACAAAACCAAAACTCATACCAGAACTGTTCAAAATGTCAAATAACATAATAA
TTATCACATATAGGGTTCAAGTAACAAAAAAGCTAAAACAAACTGGTTAATAATCATCTGTTGC
AGTGCATAAGAACAAAGTTAGCCTCTTTTCAAACAAAGAATGGGGAGTCTTCCCTTGTTACTCA
TCTCCCTGGATCAAGATGAGTTTATTGCCTAAGCATATAATAGCAGGTTCGAGTTAAACTTATG
TTGCAGTAAAAAAAAAGGATGGAACGAAGAGAATATATAAACAGGATTGGCATCATATAGGATG
AGTATAACGGTAGTAAAACCTTATCATCTTCCATGAAGATAGCCCAAGCTGGATGCCTCCTGTT
CTCCATTTGAGGGTATTGTAATAAATTAGGAAGCATATCTGTAGTTTGAGTTAAGGATGTGCAC
CCGAGTATGTTTCGGTGCATGTACCTTGTGCAAGTGTCTTGGCATGTAAGTACCACCATCCAAG
AACCAAATACCAAAAGCACAAGCACATGTAACAACTTGGAACAATACATATAAAAGTGAAAAGA
TACTGTCCAAAACAGCAATTGCCTTATTCTTCTTTTTGAAATGCTTATAATATTGTCTAGCTAA
TAAGTTGGCATCATGCTGTTCCATTCCCAACAGCCATATGTCTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021