Detail information of BGIOSGA034352_circ_g.1


General Information
CircRNA Name BGIOSGA034352_circ_g.1
ID in PlantcircBase osi_circ_009362
Alias Chr11:5067502_5068733(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4659610-4660841  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA034352
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034354_circ_ag.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034352-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTCAGCTCTGCACTCCATTTATTTCCACTTCGATCAACCAGAGAAACCATCCCAGTAGGTTG
ATTCTGAAGGCATTGGTTGAATGATGATGGGATTTTccatgaaaaatccaacatagacatatga
ctccatcattatttgcacggcaaaaggattcttagatttaaactctcttgccctttgaagagca
tggtcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGAAAAATCCAACATAGACATATGACTCCATCATTATTTGCACGGCAAAAGGATTCTTAGA
TTTAAACTCTCTTGCCCTTTGAAGAGCATGGTCCTTCTCTGCTTCAGTTACTGGACGCCTCTGT
GATATTACTGTTAGTTGTCTTTGACCCTTTGAAACACCTGAAAAGTGCAACACAGTCAAATTGT
CTACAGAAGTAATTTATTAGCACTACATTTAGGGGACAATAACTTACATCTACCACGCCGAGAC
ACCTCACCAGACAGAAAGCGCATCAGGAATGGTGGATTTGGTGACTTGCTAGAAGAATTATCTT
CATCTGAGCTGCATGATGAACCTATAATGTGCAAAAGTAATTTTTTTGGGAAATCATATGAATC
CTTAGGATTCTGAACAAGTATGATGGAAATAAATAAATAAGCCACCTCTAACCAAGAGATTAGA
AATATGTCTTTTTGCAATTACTTTGCATGGTTTGGCACCACGTAGCTTATGGCTATGCATGGAA
CAAATCAGGAATACAACTAAACAAGTTCTATAAACGAAATGGATGTGGCAAGTCATTTGTGCCG
TTATGCGGACCTCCCTGGTCCCCCAACAGTTCAAAATAATTGACTATTAATAGTCATCATCTAA
GCTGACTATGCCAAATATGTGTATAACACTTTCAGAAATATAGAAATGTTTTACCTCTGGTACT
GTTATGGCTTGTCGATGTTACCTTGGACTTGCCAGCAGAAGCTCCTGCACGTTTTCTCCTAGAA
CTTTCGCAAACATTAGCCTCAGATGACTTCTTAAATACAACCACCCTATCTTCCATAAGGTAAT
CTACATCTCTAGTTCTCTTTCCTGTGATTCCATTATTTTCCTTCAGGGCGGGAGCCATTTTCTC
TGTTGTGATAGCTGCGGTGACCATGCCCCCTTCATCACTTTCTGTTTTAATGATCACATTTTTG
GAAGGGTGAGCAGAGAAAGTTGATATCTTGTCAATGCCTGAAGGTTCAAAGACTGTCACTGAGA
ATTGTGACCGTTTATCATAAGTGAATACTAAAAATTGACCACACTGAATTGAGTTATCTCTGAC
AAATTCTTTCCATCCATGCACAAAGAAGAATCCCTCAGAGTCTGAAGTCAGCTCTGCACTCCAT
TTATTTCCACTTCGATCAACCAGAGAAACCATCCCAGTAGGTTGATTCTGAAGGCATTGGTTGA
ATGATGATGGGATTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021