Detail information of Zm00001d027340_circ_g.2


General Information
CircRNA Name Zm00001d027340_circ_g.2
ID in PlantcircBase zma_circ_000506
Alias circ91
Organism Zea mays
Position chr1: 3273411-3275707  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d027340
Parent gene annotation Protein kinase superfamily protein
Parent gene strand +
Alternative splicing Zm00001d027340_circ_g.1
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d027340_T005:7
Zm00001d027340_T007:7
Zm00001d027340_T006:7
Zm00001d027340_T003:7
Zm00001d027340_T004:7
Zm00001d027340_T001:7
Zm00001d027340_T008:5
Zm00001d027340_T002:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTGTTTCTTAGTGAGTGACTCTGTATTTTCAGCTAAAGGATGCAGCACAACTAGCTTTGAAG
AGAATGCCTTCTTCAGAACAAGAAGCACTTTCTATGggatgatgtaagaaaggagactcaaact
atgagcttgatagatcaccctaatgtcatcaggtcttactgctcatttgttgtgggtcataatc
tttgggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGATGTAAGAAAGGAGACTCAAACTATGAGCTTGATAGATCACCCTAATGTCATCAGGTCT
TACTGCTCATTTGTTGTGGGTCATAATCTTTGGGTGGTAATGCCATTCATGTCAGAGGGTTCAT
GCTTGCACCTAATGAAGGTTGCATATCCCGATGGTTTTGAGGAGCCAATTATTGCCTCTATTCT
AAAGGAAACACTCAAAGCTCTAGACTACCTCCATAGGCAAGGACATATTCATCGTGATGTGAAG
GTTAGCTCTGTAGGAGTTGTTTGAGATTAGTTTTGGCAGTATTTTCTCTCTCTCAACATATCAG
CTTTTTTCTCAACATATCATTGTTGCAGGCAGGTAATATCCTTATTGATAATCCTGGTGTAGTC
AAGCTCGGGGACTTTGGTGTCTCTGCTTGCATGTTTGATAGAGGCGATAGACAAAGGGCTAGGA
ATACATTTGTTGGAACACCATGCTGGTAACTATGTTTCTTTTCTATAAATTTCTTCTGCTAGAG
TTTCAATAGAAAATAATTATTTTTATGCATAATCTGACATGTTTTTTTTTTCTTATTTTACTTG
GTGTTTAGGATGGCACCAGAAGTTCTCCAGCCTGGAACTGGATATAATTTCAAGTACGTGCTGA
ATATCAATACCTATCTCATGTTTTCTACTAGCACATGCTTAGTTCTGCTTTGACAACTAGCATT
GCTTAATAAACCTGAGACCGAGTAAATATATATTGGAATTTACTTTTACTTGTAGTGTTTAAAT
GTGAGTTCAGCACATCAAGTTGGAACTCTTACCAGAAACTAGGTGGTCACTAGGTTCTGGTTGG
TTCTAGTTTGAGGTTTCTGGGAAAACTTCTCTATTATCGTTTTTCACTTATACTGCTTACAATT
TTACTGATGTAATAACCATGTCTGTTTAACGTGTCGTAGCTTTCTTACGTGTACTTTTACTTTT
CTTGGTTGCTATTGTAAGCTACATCTTCTAACAGCTATCAACTCTTGTACAGAGCTGATATATG
GTCGTTTGGAATAACTGCACTAGAGCTGGCACATGGACATGCTCCCTTTTCGAAGTACCCTCCC
ATGAAGGTAACAAGTCTTTTTCTCTTTGCAAATTTGCTAAAGCCTTTTCCTTTTCACTCTTACG
GAACACGAGCAGACCCAGTGCTGGAAGCTCCAACATGAATGGAGTCTAGGGAAGAGATAAACCG
AGGCAAACCTCCCCCCACAAGCGCGGAGAGGTTGCTTTGGACATGCGACCTAGTGATTCAGTGA
GACAGCTCTCACCATATGTAATAATAGTTCCTTGGGAGCCTGAAAGATTGATGATTGATTGCAT
GAGTTTTCTTTTATTTGAAATTTCATGAAGTAACTTATTTAGACAGTTACAGTGCAAGCATATA
TGGTCTTAATCATTTTACTATCCAATCTTATCATAGTATTACTAATTAGAGACTCTTTTTGTAG
CCTCCACATCAATCCTCTCGGAACATGCTAGAAAAAGAGAGATCCTATAAATTCTCCACATATT
CTTTCATGAATAGTTATTTAGATTTGCTGATTGTGATCGGTTTGTAAAACTATTATAGGCGTCA
AATAGTCTTGTCTATGAAGTTAACTATCTGATTTTACAAACTTTCTGGCTCAATAGCTATTTCC
ATGAAGTTCACTTTTTTTTAAAAAATAATTTTTAACTGTGTAGTTCCTTGGTGACTCAGGTTCT
TCTCATGACGCTCCAAAATGCTCCTCCAGGTCTTGACTATGACCGTGATAAAAGATTTTCAAAG
GTAGTACTAGTCCTTTTGGTAAATTCTTGGGCAGTGAATTTTTTCTGATTATATTTTTTCTGTG
ATTTTGTCACAAGCTTTCTGTTCTAGAATGCTGTCACAGTCATTTTTTTTATAGAGTCTGGGCC
TTAGGTTAGATTGTTGTGGTTGCTCTTCTAATGAAAGTTTTTCAGCTGTAATCAGTCCTTCAAG
GAAATGGTTGCGATGTGCTTGGTGAAAGATCAAACGAAGAGGCCAACAGCTGAAAAATTACTTA
AGCATTCTTTTTTCAAGAATGCAAAACCTCCGGAGCTAACTGTTAAGAACATTTTAACTGATTT
GCCCCCTCTTTGGGACCGTGTAAAGGCACTCCAGGTTGGTTTCTATGATTTGTTTCTCATTTAT
TTTTTTACACAATGCTTGTGATAGTGTTTCTTAGTGAGTGACTCTGTATTTTCAGCTAAAGGAT
GCAGCACAACTAGCTTTGAAGAGAATGCCTTCTTCAGAACAAGAAGCACTTTCTATG
Conservation Information
Conserved circRNAs NA
PMCS 0.04693124
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b