Detail information of AT2G20760_circ_g.2


General Information
CircRNA Name AT2G20760_circ_g.2
ID in PlantcircBase ath_circ_014072
Alias NA
Organism Arabidpsis thaliana
Position chr2: 8943411-8943496  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G20760
Parent gene annotation Clathrin light chain 1
Parent gene strand -
Alternative splicing AT2G20760_circ_g.3 AT2G20760_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G20760.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCTCCTTTTGCATCCTTCCCATCTTTCCCAGTTTTTGCATctttggatctgcaggtttccc
atcttttaagtccttagcgtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGGATCTGCAGGTTTCCCATCTTTTAAGTCCTTAGCGTCTTTCCCTCCTTTTGCATCCTTC
CCATCTTTCCCAGTTTTTGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.141472868
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017