Detail information of BGIOSGA024102_circ_g.1


General Information
CircRNA Name BGIOSGA024102_circ_g.1
ID in PlantcircBase osi_circ_017193
Alias Chr07:22610980_22618241(MH63RS2), Chr07:22751182_22758444(ZS97RS2), Chr07:22610980_22618241(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 20295121-20299745  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA024102
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-NN
Number of exons covered BGIOSGA024102-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGTGCGGTAGAACTTCACGATTGGCAGCTTTGGGAAGACGAAGGCGTAGAGTATGACACACA
GAAGCTCGAAGAAGCATGCTATCGAGGAGAACATCAggagagtgttgtctgtggtcacatgtac
gaaatgttgcggtctgaatttgcgaccaatgtcctgccatacctgctgcgtgaaggggcactcc
atgaagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGAGTGTTGTCTGTGGTCACATGTACGAAATGTTGCGGTCTGAATTTGCGACCAATGTCCTG
CCATACCTGCTGCGTGAAGGGGCACTCCATGAAGAGGTGCTGTACCGTTTCGAGATTTCTGAAA
CAGAGTTGGCAGAAATAGTTATTTGGCCAGCCCCTGCATTGCAAACGATCTGCCGTCCATATTC
TATTTTGCGCCAGCAGCCACGTGAAGAACTTGTGTTTCCCCGGTGTCCAAGTTTCCCGTACAAG
CTCAGTAGAATCCGAAAACGTTTTGCCCATGAACTGCATGACATATGCTGATCTTGCCGTATAC
AAGCCACTGGCCGACCACCGCCAGAGGATTGTGTCCTCAGCCCCTTCATGGATCACCTCTCCTG
CGTTGTGGAGCACTTCTCATACGCATATATATATTCCTGAAGCAGCTGTATTGTCACCCCTCCG
CGGATGTCTTCGATCCAAGCATCATTGGTTATTGCCTCAAGAACCGATCTGTTTTTCCTTTTGG
AGTGCTTGAAGAGGTTTGGGGCTAAGTATTTCAGCGGCTGATCTCCTATCCAGTTGGATTCCCA
AAATTTCGCCTTTCGTCCATCTTCGGCCAATACTTTGGTGGCAGCAGCAAACAGAGCACTATCA
GTGTCATCACAGGGCGGCAGGGTTCCTATCCATGGTTTTTCCGGGCTTGTCCACTCATACCAGA
GCCAACGTAGCCTCAGCGATCGTGAGAAATTCTCCAAACAAGGTATGCCCAATCCACCATGTAT
TGTTGGAGAACATACTTGCTGCCAATTCACTTTACATTTCCCGCCCAAGCTTTCTTGGTCTCCG
TCCCAAAGAAATTTTCGTCGCGCTTTGTCAACATCATTTAGGAATCTTTTTGGGGGTTTAAGAA
CGGTCAGCAAGTAGGTTGGAATGGCACTGAGAACTGATTGCACAAGAACCTTCCACCCGCTTTG
ATAAACTAGCTTGTTTTCCAGCCCCCCATCCTTGCTCTGATTTTGTCCATTACCGGTTGCAAAT
GGACCCGCTTTAACTTCCCCGTAGTAAGAGGCAGTCCAAGGTAGGTTTGGGGGAAAGCACCCAG
CTGCCCATCGAAGTTTTGAGAAATATCTTGGAGATCTATGTCATTGCATCGAATTGGCGTGATT
GAACTCTTTGTTGTGTTTACCTGCAGGCCCGTGGCATCCTCGAATTTGTCCAGGATTCCCAATA
GGGTTTGCACTTCCTGGCGTGAAGGATTTAGGAACACTGCTGCATCATCTGCATAGAGGGAGGT
TCTGAATTTTAGTGCCCGCGGGGCTACGCTTGTCAACATTCCTTCCCCGGTGGCCAAGTCCAGG
ATCTTCTGTAGGGGATCGATGGCCAGGATGAACAGGTAAGGGGATAATGGGTCACCTTGCCGTA
ATCCTCGGCGATGCTGAATACATTCCCCCATACTTCCATTCAAAGATATCCTGGATGAAGATGT
TGCTAGTAAGAGGGAAATCCAATCTCTCCATTTAGGACACATCGAGTTTGTGTGACATCCCTTA
TCTCTAATACCAGAAATCTTCACCTCTAAACCATACAAAACCTTGCATCACTTTACGTATAGAT
GCCTAGTTTCGCTGATATGGCATCCTAGTCAACAAAAAGAATAAAAAAATGGGGTCCACATATC
AGCGTCTTCTTTCTTCTCTTTTCTTTTCAAGTCTAGGAGGTAGAGGGAGGCGGCCGGCGGGATT
CCAGTGGTGCGAGGTCATGGGCGTTGGGGGCACCAAAGTAGATGGGCTCCAACCCGCCCTCTAG
CACATAGTAGAGCTTCTCCGTCGCGTAGCTATCGGCGATAGTGTTCTCGATGGAGACATGAACT
TATAGTGTGACATTGCGCGTCATGCTCCACAACCGCATCCCCGCACTCCATTGCCGCCCTTGGC
CCCTCCTCCTTCACCTACGTCGCTATCCTCATCGCGCTCCTCCGCGTGCACCGCCTCGGCAACT
TCTTCGTGCTCCACGGGTTCGCCCTCCAAGCCATCGTCTCGCCCACCGTCGTCACCCCAACGCT
GCGTGCACAACGAACCTTTGGATGTCGAGATCGACAATGCCATTGATGGCAGCATCGAGGTCGT
GGCAGTGGGACTTGGGCGCTAACAACTTGAGCTCATGCGCGACGTTGACGCCCCAGCTGACCTT
GAGATCCAGCGCGTAGAGGTGGCGCACAGCCGCACCAATGGTGTCCCTATTGGGGGCATGGGTG
GCGCTGTAGACGTCAACAAAGCGGTGGACGATGCGGTGCCTGAGGTTGCGAGCACGGGGCTTGG
TGGCGGTGGCCCTGTCGATGGCGGTGAAGAGCGAGCTGCCGTCGGTGTTGACTTCCCCAACGTG
GCCAAGGCGGAAGACGAGGGACAGGAGTGGGAGCAGGGAGGGAAGCTTCCAGGTGACTCCACGT
CCATGCTCCTAGATCCAGTGGAGGTGGCGGCGGTCCAACACAAGGGTTAGGGGTGGACCAAGTG
AGGAGCGGGGGCACAAGGATACGGGAAGGGGGAGCGCCTTGGTGATGGTGACGGCGGCAAAAGA
GGAGCTTGCCCATTCGAGTCAGTTTGGCAGCGAAATATCTCGTGGATAGGGCCACTTACATGTG
GGCCCCACATATTTTTTTATTCCCTCCTTGCTGACTAGGATACCACATCAGCGAAACCACCCAT
GCATACTGCCATGGGATCTACTTTGCATGATTTTGAAAATTTGAGAGGTAGAGCTTTATGGTAT
TAGAGATTAGGGATGTCATACAGACTCGACGTAAAGCTAAGGAATGGCAAGTGGATTTATTCCT
AATTGTTATGGGTCCTAGGTGCCACCGGTCTGAGGGAACATCAATACCCAAATGGACCGAGTTA
TGGAGTATGATATTCTCTAAAATAGTTATGAAATATTTTCTTCCAAAATTTAATGTAAACCATT
TTGAAAAGACCAATCTAAATAGCTTTTATGAATAACCATATATGGTCCTTGACAAAAAAAATGG
TGTAAATACTCTCTTTTAATCGAGCACGTGGCATAACATTTTAAACAAAGCATTTAAAACTTTA
TTGGTGATTAAAAGTTTTAAATGCTTAGGGCCCCTTTGAATCACAGGAATGAAAAAACAGAGGA
ATAGGAAAAACGTAGGATTTTTGTAGGAATGGAACCGTAAAAACAGAGGATTGCAAAACATAGG
AAAGTTATGTTACTAGCCCTTTGAATGGGTATAGGAATTTCACAGGAAAGAGTGTCAGGAAGTG
TATTAATACATGTCACTTTGGCCTTATCCACAATATCGCAATGTATATTTTCTTCTAAAAGAAC
AACAATGATGCATATGTCTGTCATTTACCTCGATCCTACGCACACATGATGGAAAAAAGAGGTT
AGGGTGGATGTTTTCTTTCCTATGTTTTCCATATGAAATGAGTTCCAAAGGAAAATTTCCTCTA
ACTTTCCTATGCCCTAATCCTATGAATTAAAGGCTGCTACAGTGCCCAATCCTAAATCCTATAT
TTTTCCTATGAAATTCCTATGAATCAAAGGAGGCCTTAATGTTGTTTCTTTCTGATTTGATATA
ATATCACAATTGATTATCATTTTCGTGTTTTACTGATGTCGAATATTCAGATTTCCTGTACATG
CAAAAACAAAAACATTTTTTTATCACCACCCTTTGCCTATGAGCCACATCCAGTCAAGAACAAC
CCCACAAAATATGCCCGCCAAGAGGAAGAACACAAGCATATTGCCCAAAGCATTCTGTTCAGGT
CCCTGCAAAAAATCATGCACACAACTTGAGCCCAATCAACCAACAGAGAGATGGTTCAGAAAAT
TCAGAGACCAAACCTTATAGCCTCTGGGCGCCTCAGTGATGACACAAACGGTGAGATGCCCATT
GCTCAACCCAAGAAACGACGTTAGCATGATCACCCAGCCCTCGTCACAATACTTCACCGTGAAG
TAGAACGCAGGGACGAACAAGAACCTTGCAACGACTGCGATTAGCAGCCATTTCCTGGATGTCA
GCTTGATCTGCTCGATCAGTGGCATGTATCTCCCGATCAGGTCGGACACATTGAACGTTGCGAT
CAGCACAAGCGCATACCTGAATTTTTCAAATTTGAGTGATGAATTTATGCATGGCACTAGCAAA
AAAGTTACTGAATTTTTTCAGAGATTAGTAGGTCAGTAACTAGTACCAAGAACCCAAGCTGTGT
GTCCCGGTGTCTTCAGCCAGAAAGCCCGGGAAGATTGACAGTGTGAGGACATAGATCATGAACA
CGTCCAGAGCGTAGTCCATGTTCTGATTTAGCAGCTGTCTGTTGCTTAATCGTTCTGCGAAAGC
CTGGTCTTCTTCATCCTGATAAATTCATGGCACAAGTTCAGAATGGTATCATCTCTTTTCAACC
TGAGCATGATTGCTTGCTCGAATTGCATACCAAAGGATTTTCTGGCTGACTTTTGATGCCACCG
GCAGCGAGGTCAGCAGTGACCGTCAGAGACCCCTCGGAAGCAGCCTTTGTGCGGTAGAACTTCA
CGATTGGCAGCTTTGGGAAGACGAAGGCGTAGAGTATGACACACAGAAGCTCGAAGAAGCATGC
TATCGAGGAGAACATCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2093-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021