Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d004716_circ_g.1 |
ID in PlantcircBase | zma_circ_007273 |
Alias | zma_circ_0000798 |
Organism | Zea mays |
Position | chr2: 133454849-133456741 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d004716 |
Parent gene annotation |
NAD kinase 2 chloroplastic |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d004716_T019:1 Zm00001d004716_T017:1 Zm00001d004716_T007:1 Zm00001d004716_T003:1 Zm00001d004716_T015:1 Zm00001d004716_T012:1 Zm00001d004716_T005:1 Zm00001d004716_T006:1 Zm00001d004716_T001:1 Zm00001d004716_T002:1 Zm00001d004716_T004:1 Zm00001d004716_T021:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.164882721 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
133456623-133454851(-) |
Potential amino acid sequence |
MSALCDPETGECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVD STSDMIPPLTLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYP CPTLFANWFPVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLY LSAVQEAVSSGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRW KQYVTRSERLAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEID IETARHNLEVTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRS KKVYPKSVLNSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSG ITDGKPSNNGAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNV DGSMCASATGVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVL LLKKLGDELMEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPET GECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPL TLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWF PVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVS SGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSER LAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLE VTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVL NSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNN GAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASAT GVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDEL MEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDV ESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKR CCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSD DSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNM LVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYIN GNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQ STQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSL LVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKK EREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRR KAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKENFQ TRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDVESEDLPILE DKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKRCCESMQLAL ASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSDDSGTDEPEV AFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNMLVEIGTAPS AEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYINGNGKVLTSD KTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQSTQQGEMLG TGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSLLVSRRKQNF STERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKKEREVSVTTF DTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRRKAEMFLVRT DGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |