Detail information of Zm00001d004716_circ_g.1


General Information
CircRNA Name Zm00001d004716_circ_g.1
ID in PlantcircBase zma_circ_007273
Alias zma_circ_0000798
Organism Zea mays
Position chr2: 133454849-133456741  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d004716
Parent gene annotation NAD kinase 2 chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d004716_T019:1
Zm00001d004716_T017:1
Zm00001d004716_T007:1
Zm00001d004716_T003:1
Zm00001d004716_T015:1
Zm00001d004716_T012:1
Zm00001d004716_T005:1
Zm00001d004716_T006:1
Zm00001d004716_T001:1
Zm00001d004716_T002:1
Zm00001d004716_T004:1
Zm00001d004716_T021:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCAGCACGGAATATGCGGCAGTAGGCCTCAATCTCCGCGATGTCACCAGGCACCGGACCGAT
CCACAACAACTGGGACGGGTCCCTTGTCTGAAAATTctctttagcttcttccatcagctcatcg
cctaatttcttcaaaagtaagacagtctttggaggagatttccacataagcatctgttgctggg
tactagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTTAGCTTCTTCCATCAGCTCATCGCCTAATTTCTTCAAAAGTAAGACAGTCTTTGGAGGA
GATTTCCACATAAGCATCTGTTGCTGGGTACTAGGATGTGTAAAAGCCAGAGATGATTCTGTTA
CTTTTTCTCTAGTACAAGAAAATCCATCAGTACGTACCAGAAACATCTCTGCTTTTCTTCTCGA
CTGGAGTCTAACGACACCAGTTGCAGATGCACACATACTTCCATCAACATTATTTGAATTGTTT
CTCTCCAGATAAGGGGTACCATTCTTTTCAGCAGTTTTTTGTGATCCAACCTGAACCTTTCCAT
TAGAACTGCTCGCCGATGCTCTAGTATCAAAAGTAGTGACTGAAACTTCCCTTTCCTTTTTCTC
AATTAACGAAAAGGCTCCATTGTTGGAAGGTTTTCCATCAGTGATACCTGAAGAAACTGATAGA
ATATAATCATTGTCAAATGATGTTCCATTTGAACTTTCTAAAATTGTGAACTCTGCTGCTTCAT
AGTCAATGGTTCCATTACGCTCTGTGCTGAAATTTTGTTTTCTCCTTGAGACCAGCAAGCTACT
TGATTGTCTCCTTGAGTTCAGAACAGATTTTGGATAAACCTTTTTGCTTCTAAAAAACTTGCTC
ATCTCTTTTCTAGAGAAAATATCACAAGTAGGAAATTGTGCTTTAAGGGGGTTACTCTCCAGTT
TAAAGTTTGACAAGGGTTCTGTCCCAGTCCCAAGCATTTCACCTTGTTGAGTACTTTGGTCATC
GGAAAGGGCATTAGTGACCTCCAGATTATGACGAGCTGTCTCTATGTCTATCTCACATGATTCT
CCATTGTTCATGGTCCTATCAGATTCCGTTACCATACCAATTTCAGTTCGATTCATAGAGGAGC
TTGGGCTGCCCGTGTGCTGCTTGGTCTTGTCACTTGTCAGGACCTTACCATTCCCATTTATATA
GTGATTTTGGACAGCCAATCTCTCTGAACGAGTAACATATTGTTTCCATCTTGAGACCATTGCA
GACGTCCTAGAAACACCTTCTTTGCTATGGAGATAAATGGGCTTCTTTGCGCCATCTGACACAA
GAGCTGCAAATTGTTTAACCTGTTCAGCTGATGGTGCAGTTCCGATCTCAACCAGCATATTCAC
CACCTCTATCTTCCCAGATGAGACAGCCTCCTGAACTGCTGAAAGGTACAAATCATCTTTAACA
TCTTCTTCCCGGAGATCAACAATAGTTTTGAATCCCTTTTCTAGTAGCCATGCCAGCCCCTCCT
CACTGACTTGCCCTCCCCTCCAAAATGCAACCTCGGGCTCATCTGTTCCTGAATCATCTGACAC
AATCGAAAGGTACACCGGAAACCAATTCGCAAATAATGTCGGACATGGATAACCATCAGGCCTT
GAGAAACCTGCATCGTAACAAGCGTTCTTCAATCTCTGCAGCTTCCTCCATATATTCAACCCCC
TGGGCTCACTCGGTACAAGGTAGCTGGCAAGTGCCAGCTGCATACTCTCACAGCAACGCTTCAT
GTCTCCACGGAACAAGGTGAGTGGTGGGATCATATCAGAGGTGCTGTCCACAGATCCATGGAAA
GCACTTGCAACACCTGATCTCCCTGAGAGCACCTCATTCCTTCCCCGGTTCAGCAACGCCAGCA
TGCAACCAAGGACGGCAGTGACCTTGTCTTCCAGGATTGGCAGATCCTCTGATTCCACATCATA
GCGTACAGGACACTCTCCTGTCTCTGGATCACAAAGTGCTGACATAACTGCGGTGTGGAGCTGC
TCGGCAGCACGGAATATGCGGCAGTAGGCCTCAATCTCCGCGATGTCACCAGGCACCGGACCGA
TCCACAACAACTGGGACGGGTCCCTTGTCTGAAAATT
Conservation Information
Conserved circRNAs NA
PMCS 0.164882721
Functional Information
Coding potential Y
Potential coding position 133456623-133454851(-)
Potential amino acid sequence MSALCDPETGECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVD
STSDMIPPLTLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYP
CPTLFANWFPVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLY
LSAVQEAVSSGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRW
KQYVTRSERLAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEID
IETARHNLEVTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRS
KKVYPKSVLNSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSG
ITDGKPSNNGAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNV
DGSMCASATGVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVL
LLKKLGDELMEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPET
GECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPL
TLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWF
PVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVS
SGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSER
LAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLE
VTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVL
NSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNN
GAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASAT
GVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDEL
MEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDV
ESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKR
CCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSD
DSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNM
LVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYIN
GNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQ
STQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSL
LVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKK
EREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRR
KAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKENFQ
TRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDVESEDLPILE
DKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKRCCESMQLAL
ASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSDDSGTDEPEV
AFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNMLVEIGTAPS
AEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYINGNGKVLTSD
KTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQSTQQGEMLG
TGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSLLVSRRKQNF
STERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKKEREVSVTTF
DTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRRKAEMFLVRT
DGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b