Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d004716_circ_g.1 |
| ID in PlantcircBase | zma_circ_007273 |
| Alias | zma_circ_0000798 |
| Organism | Zea mays |
| Position | chr2: 133454849-133456741 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d004716 |
| Parent gene annotation |
NAD kinase 2 chloroplastic |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d004716_T019:1 Zm00001d004716_T017:1 Zm00001d004716_T007:1 Zm00001d004716_T003:1 Zm00001d004716_T015:1 Zm00001d004716_T012:1 Zm00001d004716_T005:1 Zm00001d004716_T006:1 Zm00001d004716_T001:1 Zm00001d004716_T002:1 Zm00001d004716_T004:1 Zm00001d004716_T021:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.164882721 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
133456623-133454851(-) |
| Potential amino acid sequence |
MSALCDPETGECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVD STSDMIPPLTLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYP CPTLFANWFPVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLY LSAVQEAVSSGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRW KQYVTRSERLAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEID IETARHNLEVTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRS KKVYPKSVLNSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSG ITDGKPSNNGAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNV DGSMCASATGVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVL LLKKLGDELMEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPET GECPVRYDVESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPL TLFRGDMKRCCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWF PVYLSIVSDDSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVS SGKIEVVNMLVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSER LAVQNHYINGNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLE VTNALSDDQSTQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVL NSRRQSSSLLVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNN GAFSLIEKKEREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASAT GVVRLQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDEL MEEAKENFQTRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDV ESEDLPILEDKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKR CCESMQLALASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSD DSGTDEPEVAFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNM LVEIGTAPSAEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYIN GNGKVLTSDKTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQ STQQGEMLGTGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSL LVSRRKQNFSTERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKK EREVSVTTFDTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRR KAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKENFQ TRDPSQLLWIGPVPGDIAEIEAYCRIFRAAEQLHTAVMSALCDPETGECPVRYDVESEDLPILE DKVTAVLGCMLALLNRGRNEVLSGRSGVASAFHGSVDSTSDMIPPLTLFRGDMKRCCESMQLAL ASYLVPSEPRGLNIWRKLQRLKNACYDAGFSRPDGYPCPTLFANWFPVYLSIVSDDSGTDEPEV AFWRGGQVSEEGLAWLLEKGFKTIVDLREEDVKDDLYLSAVQEAVSSGKIEVVNMLVEIGTAPS AEQVKQFAALVSDGAKKPIYLHSKEGVSRTSAMVSRWKQYVTRSERLAVQNHYINGNGKVLTSD KTKQHTGSPSSSMNRTEIGMVTESDRTMNNGESCEIDIETARHNLEVTNALSDDQSTQQGEMLG TGTEPLSNFKLESNPLKAQFPTCDIFSRKEMSKFFRSKKVYPKSVLNSRRQSSSLLVSRRKQNF STERNGTIDYEAAEFTILESSNGTSFDNDYILSVSSGITDGKPSNNGAFSLIEKKEREVSVTTF DTRASASSSNGKVQVGSQKTAEKNGTPYLERNNSNNVDGSMCASATGVVRLQSRRKAEMFLVRT DGFSCTREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGDELMEEAKE(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |