Detail information of BGIOSGA031353_circ_ag.1


General Information
CircRNA Name BGIOSGA031353_circ_ag.1
ID in PlantcircBase osi_circ_008740
Alias Chr10:24672661_24674591(MH63RS2), Chr10:25142112_25144046(ZS97RS2), Chr10:24672661_24674591(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21833413-21835353  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031352_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTTCCCTGACGACGTGCTTTGCCACATCAATTGGTCCTTTGGGTAGGGCTACGCCAGAAGCA
GCAGCTGCCTCGGCTAAAGCACTCTGGGCCTGCAACcctgcacttgatgagctcagtgggacag
gccaggaacgagacggcgactccggcgccggcgccggcaacgacctgctggctgacggtgagcg
gcgcgccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCACTTGATGAGCTCAGTGGGACAGGCCAGGAACGAGACGGCGACTCCGGCGCCGGCGCCG
GCAACGACCTGCTGGCTGACGGTGAGCGGCGCGCCGGGCTCGGAGCGCAGCACGGCCTCCATCT
GGCCCCTGACGGTGAAGAGGAGGGCGTTGAAGGCGGCGACGGTGGCGAGCGGCGCCCCCATCCC
CTTGTACAGGCCCCTCGGCCCCTCGGCCGCCAGCGTCTGCTTGACGGCGTCGATGGCGCCGGCG
AACTTGGGCGGCTGCCCCGGCGGCGGCGTCGGCTGGCTCTGCAGCTTCACCTTGATGGTGTCGA
AGGGGTGCCCCACGACCAGCTGCGCCGCCCCGCCCACCGTGCCGGCCGTCAGGTCCTTGGCCAC
GTCACCCATCTCCTCTCCTGCAGTCAATTAGTTATTTCATCACCATTGCAAGTCAGTTCAAGGC
TTCTCCTTATTCCTTCTCCACTCCACTGCATGAATATTTGCATCTGTTTCGTTTATCATTCAGC
AAAAATCCGACATTTTTTACAGGATTCAGCGAAAGAAATACCACCACACAGGCATTCAGATTCT
ACGTCAGATCAGATGATAAGCTAGAATTACCACCCCCCACAAATCTGAAGATCTGCAGTCCAAT
TTGCTAGTCAAACATAACAACTGAAGAAGAACATGAAACACAGATTTCTGCCAATGCATCATCG
ACCCAACTGATAAACATGAAGCTGAAATTATACAAGGAAGCAGAAATATAAATTACTATTCAGC
AGAAGATCGAGCTTGGAGATAGATGGAGGTGAAGGAAGGATGGGAGCGGCCGCCGCCTCCTACC
TCCACCTCACCCAAAGCTGCAGCAGCTCAACTGGCTCAAAACAACTAGAGCCCCAGGTCTCAGT
ACTAAAATACAAGGGCTGTGGCAATAGCAGCCAATTAAAAAGATGCTAGTTGAGAGGGAATCAA
AAAAATTCAGACCAAGAAGAAGAGGAGAGGTGATTCGGATGCCAAGAGGGCAAGCAACACCAGG
GCCACTCACTCACTCACTCACTCACCAAACGCACCCCCAATCGCCATCACAGACAGCATCACTC
ACTCCCCTCACCATGGGATCGCCGTCAGATGGCCAATCCACTCCAGGCCAACCATTCCGACAAG
ACGACGAGTTTCTTTCAGCTACACTCACTCCACACCCACACCCCACACATGTTAGGCTTATATT
ATTATACATACAGGCAGACAAAAAATGCAGAGCCAGCGATCTTGCTCGCTGTTGCATCTTCCAT
ACTTCAATGTTTTGAATCACAATGTTGCAGATGAAATAAACTTGCAAAGAAGGATTGGAACTGC
TACTGCTGCTTCCCCCCCCCCCCCCCCTCAACTGCACAGCCTGGTTGTTGTTTCAACCATGATA
AGAGATAGAAATGGCCATTGGAACCAGCAATCAATCAGCCTAGAGCCGATCTTGTAATCTCATA
CGCCAGGAATGTCGCAGCATTGGCCGGGACACTACGAGCCATGGCAGGTCCAAACCCCTTGTAC
AAGCCCTTCACTCCATCGGCCGCGAGAATCTTCTTGAAAGCGTCGACCGACCCTGAGTACCTTG
GCTTCTTGTAGTCATCCACCTGAATCACGCTCTTCACGACGTCGGTAGGGTAAACCGAGAGCCA
GAACACCGCCCCAGCAAGGCCTCCGGATAGGATGAGAGAGCCCCTGCCGAGGTTTGATGTGTCC
TGACCACCGGCGAGGTACTGCTTGGTGCCTTCATACACACCAAACATCACGGCATTGCCAGGAA
CCTCGCGGCCCATTGTAGGGACAAGGCCCTTGAACAAACCCTTCATGCCGGCTTCCCTGACGAC
GTGCTTTGCCACATCAATTGGTCCTTTGGGTAGGGCTACGCCAGAAGCAGCAGCTGCCTCGGCT
AAAGCACTCTGGGCCTGCAAC
Conservation Information
Conserved circRNAs osa_circ_008131
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021