Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038769_circ_g.1 |
ID in PlantcircBase | zma_circ_009155 |
Alias | zma_circ_0002409 |
Organism | Zea mays |
Position | chr6: 164168446-164168975 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038769 |
Parent gene annotation |
F-box protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038769_T004:1 Zm00001d038769_T006:2 Zm00001d038769_T003:2 Zm00001d038769_T007:2 Zm00001d038769_T005:2 Zm00001d038769_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.099213836 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
164168934-164168951(-) |
Potential amino acid sequence |
MNYSIFFGLSHLSCNNIPVSGVQYSTNSVPNYPNFSWKESFHTKYAECASWKFVSNRALCAHCR SVIWLSNLTCASPHHCPKNRHHEVKLRPLLPDTKVLEFSGK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |