Detail information of BGIOSGA014597_circ_g.1


General Information
CircRNA Name BGIOSGA014597_circ_g.1
ID in PlantcircBase osi_circ_014620
Alias Chr04:28127229_28127798(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26358732-26359301  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014597
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014597-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTAACACGCTGCTCTAGCTTACTTTCATCAAGAGATGATTTCAGGGCATGAACATGAGCCCAT
TCAAGGAATTCCCTATCTCTGGATTCCATTATTTCCccttggtattatcatcatctctttcaat
aatctgctgtagcaattgttggttttgtgcctgtatgtcctcatatgcttgcccgatacactgg
aataggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGGTATTATCATCATCTCTTTCAATAATCTGCTGTAGCAATTGTTGGTTTTGTGCCTGTAT
GTCCTCATATGCTTGCCCGATACACTGGAATAGGTTAGTAAAAGTTTCAAACTCAGGATGACAA
TGTTTAATATATGTTTAAAGCCATACTTGAACTGCATGCATAAAAGATGGCACACACCTCGACC
TCCACTCTGTAAGCTTCACATTCTTCCTGTTTAGACTTCAGCATATGGGATAAACTGACTAGAT
CCCTGAACACAGTGAACATTCAGCAGTAAGCATCAATTTCCTTTAGTAACCCTAAAAGAGAAGT
GACCCCTACTTCAACAGTTCTAAGAGAAACAATGTTCAGAAGCATAATTCTGTACTTTCTAGAA
GTCCCAAGCTTCTGCCCTGATTCAGCAATCTCAGCTTCTGCAGTTGCTAGCCTCTGCTGTGTGA
TTGCTTCAGCTTCATTGGCAGCCTTAACACGCTGCTCTAGCTTACTTTCATCAAGAGATGATTT
CAGGGCATGAACATGAGCCCATTCAAGGAATTCCCTATCTCTGGATTCCATTATTTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021