Detail information of Os07g0177100_circ_g.2


General Information
CircRNA Name Os07g0177100_circ_g.2
ID in PlantcircBase osa_circ_032974
Alias NA
Organism Oryza sativa
Position chr7: 4078270-4081650  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os07g0177100
Parent gene annotation Armadillo-type fold domain containing protein. (Os07t0177100-01)
;Conserved hypothetical protein. (Os07t0177100-02)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0177100-02:3
Os07t0177100-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTCTTCAAAGCAGCATACTGATTGTGCATTGTTTGTGTATGTAGGGAGTGGGTGATGATTTA
GATGCTACAAGGGATGATCTTTCTAAGGCACTAATGtctgccagtgtggatgccctttctgcct
tggtgaataaggacaagctgactctctttgttttggtatgtcccagcctcatataccgtacatc
gagttagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGCCAGTGTGGATGCCCTTTCTGCCTTGGTGAATAAGGACAAGCTGACTCTCTTTGTTTTGG
TATGTCCCAGCCTCATATACCGTACATCGAGTTAGGGAAGGTAGTTGTTTTTCAGTGTGCCTCA
TTGGTGATTTTGTTCAGGTGTCAAAGATGGAGATGTACTTGACGACGACTGACCACATTGTTAG
ATCCAGAGGTTACCTTTTCTCTTTGCTTTGTTTTGCTATATTCCAAGTTCGATTTGCCTTATTT
TTGTGAGAAGCGATCAACTAATGAAAGTAAAAGCTTGAACCTTTCTGTGGGGTAGATTAGGGAT
ATGGTCACCAGTTTCTTGTTATAGTTACTTAGCATTGTTGGCACAGTTCTAGTCTTCTAGAAGA
TGCAGAAGACAATCTCTTCTCTTTGTGAAGATTATCACAGATCTCTACTTATATACAAATACTG
AAAATGGGGGAAAAGCATTTCACTTTACTAGAATCTATGATCCATTTGCGAAAATGTGAATTAT
TTCCAATCATTATTCTCTTGTTGTGTGACCGGCCAAACTTCTCTTGCTTGGTGACTTGTAGATT
TCAGTCGAACCTCATATTGTTTGTCAACAATCTACTTTTTTTTTGCAGGAATCTTGCTTCTTGG
GGAAATATTGTGTCGAATTTCATTTAAACAGTTAGATGTTAATGCTATTTCAACATTGTCAGAC
TTCTTTATATCAAGATTGGTAAGTGTAATAATGTGAATCATAGTTATTTCCTTTCAAACTACTG
TTCTCAGCTCCTGTAACTTCAGTACTTCACTATAGAAAGAAATTCAATGTGTTACTTTATGTTG
ATTGGCATTTGGTGTATGATCACAGCTTCTCAAACAAGTAGATCAACAGTTCTTTTTACTTGAT
TAACTCAGTAATATGACCTTCTGTTGTTATTATTGTCTCTTTGTCAAATGTCGAATGAGATCAA
ACACCTGGGGGATAGGGACGTAAAATTAATGAAGCAAAATAGAAGAGATTTGCTGAATTTGTGG
TGCGATGCTTTCTTGGGAAAATTAAGCATGGAAATATATATTTTTATTTGCTTACATTTGCTTT
CTCTCCACATTTAAACAAGCAAACATCCACATCTTTAATTCCAACTTCTCAACCCTTGATGTGA
ATCATCACCATCATAGATTTCCAGCAATTAATTCTAAATGTACTGTTGAATATGACTAGCTGAA
CTGCAAGGCACCATGCTATATTTATTCAAATGACTGAGTTCTGGTCACTGCTAGGTTCTAATGT
GTGCCTATGATTATTTTTGTGTACGCCACATATAACAGAACAGTCAGAATTGTGTTCTAATCAT
TGTTGAGCATTGCATGCTGAGTGAAAAAGGGAACATGGTTTTAACTAGTATCATAGCCTCATTG
GAGAAATGGGATTGAATTTCATTATTTGACATCTCTAGAAACTGACGACTTTAAAAGTTGTTAG
CAAACAAAGATTTGTCTAGGCTTTTTATTTGATTAAAGACGAAAAAGGTTAAACTAGGTGTCTG
AGCTTGGTTCTAGATTAGGCACTCTTTAGTCGTTTAGTTTGCCTAGATTGGACCTAAGTGTCAT
TTGTAAAGAATATTCTCCTTGTGAATTGCTTTGGATAGTTTAGAAGTTCTTATTTTTCACATTT
TTATTTTTTATGTGATGAAAACATTGTGTGGAGCAAATTGGTGAGCTCAACATCTGAATATCTG
ATAACTCCTGTTATACTGTATTTATTGTCTCATGCTAAAAATTATATTTATATTATGGTGCCAT
CCTTTTATTATCATAACAGTAATCATACTTATTTTTACATATCAGTCAGATTGGCAAGCACTTC
GAGGAGCACTTGTTGGATGTTTGGCCTTGTTGCACAGAAAACGAACTGTTGGTAGTATCATCAT
TGCTGATGTCAAAAGACTTCTCGAGACTTTCTTGCAGAATGTTCAAGTCCAGTCACTTGCAGCT
GCTGACCGCAAGGTTTATGTGATTATTTATTTTTGTTGCAGAGATGCTTAAACAAGAATTTATC
CTAGTCGAATCCATTGACAATTTTTTATCCTTTTTATTCTCTATCCAGCTATGCTTTCAAATTC
TGAACTACATACTGGATCACTACCCTGAGGCTGTCAAAACAATGGTATGGTACTAAGTCAGTAT
CTGGACAACAGTAGATCACTGCATCATGCTGAAATTATCTTAGCCTAGTTGTTATTATAACAGA
AACGACAGTGCCTTTTATCAATCCTATCTGTGCATAGACTATCTAATAATGATAGCAGCAGCAC
AGCTTTGCACTTCCTTTGCTTTAATATGCTATGTTTTATTGTTGTGATTATTCCGCGGTATGTT
GGCACTTCCCTCATCTGGCAATCATATATTATCTTTTTTATTCCGAAATATTTGACTCTTTTGG
CCAATCATGAAACATGCTTTGGACAAAACATGACAATCCAATAATACTGCAAGCATAAACAACA
AGGTATTTAAGAGTCATATGGGTAGTTTTGAAGTATACGTGGGTATGGGGAAGTGCCAGCTATT
CAAGGGTGGAAATAAAATCATTATTATGAGCCTCTGACATGAAGGCTCAGTTTGTATTGAACTG
TCGTTTTGGTCACTTGCCCTAGATGCTTGGTCCGTTCTTTTGGTTTTGTTTGGTCATTAGACTT
TTAAGCGTGCATTGTATTTTCCGACTCTTGGGGTGGGATTGTTTTTCCCCCTTGCATTCTTCTT
CTCTTATTAATGAAATGATGTGCAATTCTCTTGCGTGTTTGAGAAAAAAAGGTTTGTATTTCAC
TGTCAGCGTGTACTTTATGTTCCTTAGAATTTTGAATGTATAGTATTCTCATTTATGAATTCTG
AGGTTTTGACATGGAGCCATGGAGGCACAGTTTCCTTTTCACTATCAATCTGTTAGTAAGTTTA
TAGTCCACTTCAATTTTCGGAAAGATGAGTACAAACCAATACAAGTTCAATTGGTATCATGAAT
TTCTAGGGTGATGAGCTTCTGTACGGAATGTGTGAAGCAATTGATGAAGAAAAGGACCCGGAAT
GCTTGAAGCTTTCATTTAATTTGGTCGAAGCTGTCATGAAGCTATTTCCAGATCCATCTGGTTT
GGCAGCACAATATGCAAGCGAAGTTTTTGAGATTCTGAGTAAATATTATCCGATCTACTTCACA
CATGTATGTCGATTGACCGTTTTGACTTTTAAGGCATTTTCATGTGCTTTATTGTTCTATTAAT
AGCTGTTCTCAGCCTTTCTTTCTTCAAAGCAGCATACTGATTGTGCATTGTTTGTGTATGTAGG
GAGTGGGTGATGATTTAGATGCTACAAGGGATGATCTTTCTAAGGCACTAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.102279119
Functional Information
Coding potential Y
Potential coding position 4078425-4081647(+)
4080191-4081462(-)
Potential amino acid sequence MEMYLTTTDHIVRSRGILLLGEILCRISFKQLDVNAISTLSDFFISRLSDWQALRGALVGCLAL
LHRKRTVGSIIIADVKRLLETFLQNVQVQSLAAADRKLCFQILNYILDHYPEAVKTMGDELLYG
MCEAIDEEKDPECLKLSFNLVEAVMKLFPDPSGLAAQYASEVFEILSKYYPIYFTHGVGDDLDA
TRDDLSKALMSASVDALSALVNKDKLTLFVLVSKMEMYLTTTDHIVRSRGILLLGEILCRISFK
QLDVNAISTLSDFFISRLSDWQALRGALVGCLALLHRKRTVGSIIIADVKRLLETFLQNVQVQS
LAAADRKLCFQILNYILDHYPEAVKTMGDELLYGMCEAIDEEKDPECLKLSFNLVEAVMKLFPD
PSGLAAQYASEVFEILSKYYPIYFTHGVGDDLDATRDDLSKALMSASVDALSALVNKDKLTLFV
LVSKMEMYLTTTDHIVRSRGILLLGEILCRISFKQLDVNAISTLSDFFISRLSDWQALRGALVG
CLALLHRKRTVGSIIIADVKRLLETFLQNVQVQSLAAADRKLCFQILNYILDHYPEAVKTMGDE
LLYGMCEAIDEEKDPECLKLSFNLVEAVMKLFPDPSGLAAQYASEVFEILSKYYPIYFTHGVGD
DLDATRDDLSKALMSASVDALSALVNKDKLTLFVLVSKMEMYLTTTDHIVRSRGILLLGEILCR
ISFKQLDVNAISTLSDFFISRLSDWQALRGALVGCLALLHRKRTVGSIIIADVKRLLETFLQNV
QVQSLAAADRKLCFQILNYILDHYPEAVKTMGDELLYGMCEAIDEEKDPECLKLSFNLVEAVMK
LFPDPSGLAAQYASEVFEILSKYYPIYFTHGVGDDLDATRDDLSKALM(+)
MMILPTVRFLCNKAKHPTSAPRSACQSDNLDIKKSDNVEIALTSNCLNEIRHNISPRSKIPLDL
TMWSVVVKYISIFDTKTKRVSLSLFTKAERASTLADISALERSSLVASKSSPTPCVK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017