Detail information of AT1G80640_circ_g.4


General Information
CircRNA Name AT1G80640_circ_g.4
ID in PlantcircBase ath_circ_011331
Alias At_ciR1158
Organism Arabidpsis thaliana
Position chr1: 30312632-30313242  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G80640
Parent gene annotation Probable receptor-like protein kinase At1g80640
Parent gene strand +
Alternative splicing AT1G80640_circ_g.1 AT1G80640_circ_g.2 AT1G80640_circ_g.3 AT1G80640_circ_g.5 AT1G80640_circ_g.6 AT1G80640_circ_g.7 AT1G80640_circ_g.8 AT1G80640_circ_g.9 AT1G80640_circ_g.10
Support reads 5
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G80640.2:3
AT1G80640.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATTTTGATTTTGTTGTGCTTTTGAATGCTCTAAGGGCCTAGTCAAGGTTCAGGTTTAACTTG
GCAGCTCAGGATGAAGATAGCGGTTGATATAGCGAGattcggtgaagagtgtaaccacgaaacc
gactgtacacaagattgattctgtgaggaaaggaaccatccctgtgtatgaatatcaattgctg
gaatctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCGGTGAAGAGTGTAACCACGAAACCGACTGTACACAAGATTGATTCTGTGAGGAAAGGAAC
CATCCCTGTGTATGAATATCAATTGCTGGAATCTGCAACAAACAAGTTTAGTGATAGTAATGTG
TTGAGCCGAGGTGGTCGTGGATGCCTTTACAGAGCTTGTCTCGATGAAAAATCCTCAGTCACTG
TGAAGAAACTTGATGGCGGTGGGGAGACAGACATTGAAAAACAGTTTGAGGTTTGACCCCTAAG
ATGATTATACAGAATCGCACCATCTCATTCGATAAACCATAACTCGGTTTTTTGCTTTCTCTTG
TTGATTTTCTAATGCAGACTGAAGTAGATTGGTTGGCTAAGATCAGGCATCAGAACATAGTTTC
CTTATTGGGGTTTTGCGTATATCGGCAAACGAGTTGTATTGTGTATGAGTTGATGCAGAATGGA
TCTTTGGAGAGTCAGTTACATGGTAAGGGGATATGATCCATGTTTGTTCCATCTTTTGTCATCT
GATTTTGATTTTGTTGTGCTTTTGAATGCTCTAAGGGCCTAGTCAAGGTTCAGGTTTAACTTGG
CAGCTCAGGATGAAGATAGCGGTTGATATAGCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.185468876
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015