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circRNA ID
AT1G01740_circ_g.1
Alias
ath_circ_000118
Organism
Arabidpsis thaliana
Position
chr1: 273429-273788  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder
Parent gene
Parent gene annotation
Kinase with tetratricopeptide repeat domain-containing protein
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
TAAACTCAGCCACAAGTAACCTCTCGCCGCCTTCACAGCAATAACCGAGTAAATTGGCCATTCT
TTTGCTGCGTAGCTGACCAACCAATCTTGCTTCTTCctcgtcaaataaaactctgtaagcattg
agatcatgatatagcgtgtgtccattgttactacagtattcaagagcttctgaaatgtatagag
caaccctt
Support reads
1
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTCGTCAAATAAAACTCTGTAAGCATTGAGATCATGATATAGCGTGTGTCCATTGTTACTACAG
TATTCAAGAGCTTCTGAAATGTATAGAGCAACCCTTAGTCGCATCGCCCATTTCATTGGCTCTG
TATCCCCTGGTAGATGATAAAAGTGGTAAGCAAATCTTAGGAGAAAATCTTGAAAGAAAATCGA
AAGACAATTGATCAAAGGCATTTTCTTTTTACAGTGGAAAAGGTGTTTGGCTAGTGTCTCATTA
GGCATAAACTCAGCCACAAGTAACCTCTCGCCGCCTTCACAGCAATAACCGAGTAAATTGGCCA
TTCTTTTGCTGCGTAGCTGACCAACCAATCTTGCTTCTTC
Number of exons covered
AT1G01740.2:2
AT1G01740.4:2
AT1G01740.5:2
AT1G01740.1:2
AT1G01740.3:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
273750-273431(-)
Potential amino acid sequence
MANLLGYCCEGGERLLVAEFMPNETLAKHLFHWDTEPMKWAMRLRVALYISEALEYCSNNGHTL
YHDLNAYRVLFDEEEARLVGQLRSKRMANLLGYCCEGGERLLVAEFMPNETLAKHLFHWDTEPM
KWAMRLRVALYISEALEYCSNNGHTLYHDLNAYRVLFDEEEARLVGQLRSKRMANLLGYCCEGG
ERLLVAEFMPNETLAKHLFHWDTEPMKWAMRLRVALYISEALEYCSNNGHTLYHDLNAYRVLFD
EEEARLVGQLRSKRMANLLGYCCEGGERLLVAEFMPNETLAKHLFHWDTEPMKWAMRLRVALYI
SEALEYCSNNGHTLYHDLNAYRVLFDE(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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