Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_041912
Alias At_ciR269
Organism Arabidpsis thaliana
Position chr5: 16692758-16697578  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 AT5G41740_circ_g.1
Support reads 16/32
Tissues leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGCTTGGTCTTAAAGTGAAGAAGATGAATTCTCATGGAGTCTCATGAAGACCAAACCAGTTT
TTGGCACTTTCTTAGCTCCTTAATCATCTTCATAAGgtaggagattgggaatttcgacgcagca
cctgattctccagtgatcaaatctaagtccacacaaagagaccatattgtccaatcagttccag
atacttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGGAGATTGGGAATTTCGACGCAGCACCTGATTCTCCAGTGATCAAATCTAAGTCCACACAA
AGAGACCATATTGTCCAATCAGTTCCAGATACTTGGTGCATTGCCTTCTGTTGTGAGCATAAAA
CGGCAAACCCTATGAAAGAAGGTTGATAGCATTAGAGAAAACAGAGCATTGCAGCTCACACAGT
CCACCCATGAACTGATGATTTTTCCGGATTGATTGCATCTTAGAATCATAATCCTGTTTCCATT
GGCCTTAATTAGCTGTTTAAGTACTAAGAAAAGTCTTGTTACCTTGTGATCTAGTTAATTAGCT
GTTTAAATACTAAGAAAAATCTTGTTACCTTGTGAATTACTTAAGAATCATAATCTTACATTAG
TGAGTTACTTTATACAGTCTACAATTGGCCTTGAACTTACATTCAGGGAGTGATATGGCGGCTG
AGACTGGTCTATAAAAGCTGCTCCTGGTTCAAGCCTCCTAAAATGGTCATTTGAATGAATCTTG
TATTATTGATTCGTGTTTTTACTTTCTACTTTTTAGTAATTACTTTTTGCCAGATTGATTGATC
TTATAATCATAACAATTGTAACTCTGTAATAACTTTCTTCAACATCTCTTTTACTATGAAACCA
AGAATAGTAGCAGCAACCAACCAAACCAATAATAAACATCAAATCTTTAAGAAATAATATTCGG
ATTACCCAAATAATCAAACCTTAAGGATGGGGTCTCAACGACTTTTGGGGGAAACATTTTGTTT
TTGTATTTTTCTCTACAGTGACAAATTCCTTTGAAATTTCAGTTCCGTATATAGCTTATCCAAA
ACATCAAATTAAGCATCGTGATCCATAATTAGAAGCTTGTCATTCCCAAAAGCAGAATTTAGTT
TCTTGTCGAATAGGTAAATATCAAATTTCAACGTTTGCAAAGAAAGTTTGGTTCTTCATTCTTG
ATGTTCAAATGGTCAATTCGATATTATTGTTAATTAACTTAATACAAATATTCTCCTTTTCAAA
CCAAATATTCAATAATAATATGTACGAAAATAGTCATTGGTCCTCGACGACTATAACAAAACAC
AGAGTCGTCGAAATTTCTCTTCTCCTTTTCGTATTTTTTCAGTTCCAGTTACATTCCAATTTCT
TCGAAACTTCTCTTCTCATTTTACGCGTTTTTGCTTCAATAAATAATCCAAAGGATCGGAGCTT
GCTTTTCAAATCATACTTTCTTCAATACCAGTCTAAGAATACTTTCTTCAAGTTCAAGCATTTG
TGATCTCTCATGGCTTTGTCTTCTTCTTTGTCTTGCATCAAGAGATACCAAGTCTTTTCGAGCT
TCCACGGTCCAGATGTCCGTAAAGGGTTTCTCAGTCATTTACACAGTGTCTTTGCAAGCAAAGG
TATCACGACTTTCAATGATCAGAAGATCGACAGAGGCCAGACGATCGGACCTGAGCTCATACAA
GGGATTAGAGAAGCTAGAGTCTCGATCGTTGTGCTCTCGAAGAAGTACGCTTCTTCCAGCTGGT
GTTTAGATGAACTTGTGGAAATCTTGAAGTGCAAAGAAGCTTTGGGGCAGATTGTGATGACTGT
TTTTTACGAAGTTGATCCGTCAGATGTTAAGAAACAGAGTGGAGTGTTCGGGGAAGCTTTTGAG
AAGACTTGTCAAGGGAAAAATGAGGAGGTGAAGATCCGATGGAGAAATGCTTTGGCACATGTCG
CTACCATTGCTGGGGAACACTCTCTTAATTGGTATGTCTCAATGAATTTAGTGCTTTTTATTTT
TCTCAAGCAATTTGTTTTCGTAAATTTAGACCAACCAGATCTATTTGGTTTTGCTTTTGTTAGG
GATAATGAAGCAAAGATGATCCAAAAGATTGTTACAGATGTTTCAGACAAACTGAATCTCACAC
CGTCGAGGGATTTTGAGGGGATGGTAGGGATGGAAGCTCACTTGAAAAGATTGAACTCTTTGTT
ATGCCTGGAAAGTGATGAAGTCAAGATGATTGGAATTTGGGGTCCTGCAGGGATTGGTAAGACT
ACCATTGCTAGAACTTTATTCAACAAAATCTCTAGTATTTTTCCGTTTAAATGTTTTATGGAGA
ACCTCAAGGGAAGTATTAAGGGTGGTGCTGAACATTATTCCAAGTTGAGCTTGCAAAAGCAACT
TCTGTCTGAGATTTTGAAGCAAGAGAATATGAAGATACATCATTTAGGCACAATCAAACAATGG
CTACACGATCAAAAAGTGCTCATCATTCTTGACGATGTAGATGATCTTGAGCAATTAGAGGTAT
TGGCTGAAGATCCTTCTTGGTTTGGTTCTGGCAGTCGGATCATCGTTACCACAGAAGATAAGAA
TATTTTGAAGGCACATAGGATTCAGGATATCTACCATGTGGATTTTCCATCCGAGGAAGAAGCT
CTTGAGATCTTATGTCTCTCTGCATTCAAACAAAGCTCTATACCAGATGGTTTTGAAGAGCTTG
CCAATAAAGTAGCTGAGCTTTGCGGCAATCTTCCATTAGGCCTTTGTGTCGTGGGTGCATCTTT
GCGTCGGAAGAGCAAGAACGAGTGGGAACGTCTATTATCTAGGATCGAATCTAGTCTTGATAAA
AATATTGATAACATATTAAGAATCGGATATGACAGATTGTCAACGGAAGATCAATCTCTATTCC
TTCACATTGCATGCTTCTTCAACAATGAAAAGGTTGATTATTTGACAGCCTTGCTAGCTGACAG
AAAGTTGGATGTTGTAAATGGTTTCAATATCCTAGCCGATAGATCTCTCGTGCGTATATCTACC
GATGGGCATGTAGTGATGCACCACTATCTACTACAAAAATTGGGTAGACGGATAGTTCATGAAC
AGTGGCCTAACGAGCCCGGGAAACGTCAATTTTTAATTGAGGCAGAAGAGATTCGTGATGTACT
AACAAAAGGAACAGTAAGTTTAAGTTCGTACATATATAATTCTAGATATTGCCTATTTTTAGTG
ATAACAATCTCATCAGTCTTCTTTGGGAATATTTTGTAGGGTACTGAATCTGTCAAAGGTATAT
CATTTGATACATCCAATATCGAAGAGGTTTCGGTAGGTAAGGGGGCTTTTGAAGGAATGCGTAA
TCTCCAATTCCTAAGAATCTATAGAGACTCTTTCAATAGTGAAGGTACTTTGCAAATACCAGAA
GATATGGAGTATATACCTCCTGTTAGGTTACTACATTGGCAAAATTACCCAAGAAAAAGTCTTC
CTCAGAGATTCAACCCGGAACATCTCGTCAAAATTCGTATGCCAAGCAGCAAGCTCAAGAAGCT
CTGGGGAGGAATCCAGGTTGGTATTTGGTTATTCTTTCTTGTGCTTCTAATGATTCAATTTAAA
TAAATATGATATTTTCTCATTTGTTGTGTTTAACATGCAGCCCCTTCCTAATCTCAAGAGCATA
GATATGAGTTTTTCCTATAGTTTGAAAGAAATCCCAAATCTTTCGAAAGCCACTAATCTCGAGA
TATTGAGTCTTGAGTTCTGCAAAAGTTTGGTGGAGCTTCCCTTTTCTATTTTGAATCTACACAA
ACTGGAGATTCTGAATGTTGAAAACTGCTCTATGCTAAAAGTTATTCCCACCAACATCAACTTA
GCATCTCTTGAGAGACTCGACATGACTGGTTGCTCGGAATTGAGAACTTTTCCAGATATCTCCA
GCAACATCAAGAAACTCAATCTCGGAGATACAATGATAGAAGATGTCCCTCCATCAGTTGGATG
TTGGTCTCGTCTTGATCACCTTTACATTGGCAGCAGAAGCCTCAAGAGATTGCATGTACCACCA
TGTATAACTTCGCTAGTTCTTTGGAAAAGTAATATAGAGAGTATTCCAGAAAGCATCATAGGTC
TCACTCGTCTAGATTGGCTGAATGTCAATAGCTGCAGAAAACTCAAGTCAATTCTGGGTCTCCC
CTCCTCCCTCCAGGACCTAGATGCAAATGATTGTGTATCACTCAAGAGAGTATGCTTCTCTTTC
CATAACCCAATCAGGGCACTCAGTTTCAACAACTGTTTGAATCTGGATGAAGAAGCAAGAAAAG
GAATCATACAACAATCAGTGTACAGATACATATGCTTACCAGGTAAAAAGATCCCTGAAGAGTT
CACTCACAAAGCAACAGGGAGATCCATAACCATCCCTCTGTCCCCTGGTACTCTCTCTGCTTCC
TCAAGGTTTAAGGCTTCCATTCTCATTTTGCCAGTTGAGAGCTACGAAACTGATGATATAAGTT
GTAGTTTAAGAACCAAAGGAGGTGTTGAAGTTCATTGCTGCGAGCTTCCATATCACTTTTTGTT
GCGTTCTCGGTCAGAACACCTGTTTATATTTCATGGTGACTTGTTTCCCCAAGGAAACAAATAC
CATGAAGTGGATGTGACTATGAGCGAGATTACATTTGAGTTCAGCCACACTAAAATCGGTGACA
AGATTATTGAGTGTGGTGTACAGATCATGACAGAGGGAGCTGAGGGTGACAGTAGCAGGGAATT
GGACAGCTTTGAAACTGAGAGTAGCAGCAGCCAAGTGGACAACTTTGAAACTGGAGGCAACAAC
AATCACCACACCGATGGAAATGGAGATGGAAACTATCAAGCAGAAGGTTTCAAGTTCTTTCAAG
ATGAAAACATCAAAACCAGTAAACATACTGGTTTTAGGAGTTGGCTTCGGGAGCTTGGTCTTAA
AGTGAAGAAGATGAATTCTCATGGAGTCTCATGAAGACCAAACCAGTTTTTGGCACTTTCTTAG
CTCCTTAATCATCTTCATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.60529214
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017