Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025044_circ_g.1 |
ID in PlantcircBase | zma_circ_010266 |
Alias | Zm10circ00034, ZmciR413 |
Organism | Zea mays |
Position | chr10: 101405715-101406054 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d025044 |
Parent gene annotation |
Vacuolar protein sorting-associated protein 54 chloroplastic |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d025044_T019:2 Zm00001d025044_T034:2 Zm00001d025044_T030:2 Zm00001d025044_T002:2 Zm00001d025044_T015:2 Zm00001d025044_T017:2 Zm00001d025044_T025:2 Zm00001d025044_T010:2 Zm00001d025044_T027:2 Zm00001d025044_T013:2 Zm00001d025044_T029:2 Zm00001d025044_T001:1 Zm00001d025044_T008:2 Zm00001d025044_T005:2 Zm00001d025044_T037:2 Zm00001d025044_T035:2 Zm00001d025044_T021:2 Zm00001d025044_T012:2 Zm00001d025044_T023:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.292544008 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
101405767-101406051(+) |
Potential amino acid sequence |
MKASIKATVAELLPVLTARPIDSDSVTGGRATDADAGGQSLANKLRSLSSEGFVQLLSAIFRIV QDKFPAVLRIYRDTLITVMKASIKATVAELLPVLTARPIDSDSVTGGRATDADAGGQSLANKLR SLSSEGFVQLLSAIFRIVQDKFPAVLRIYRDTLITVMKASIKATVAELLPVLTARPIDSDSVTG GRATDADAGGQSLANKLRSLSSEGFVQLLSAIFRIVQDKFPAVLRIYRDTLITVMKASIKATVA ELLPVLTARPIDSDSVTGGRATDADAGGQSLANKLRSLSSEGFVQLLSAIFRIVQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |