Plant Circular RNA Database

Detail information of AT2G27170_circ_g.12

			
						 General Information
					
						CircRNA Name
						AT2G27170_circ_g.12
					
						ID in PlantcircBase
						ath_circ_015158
					
						Alias
						2:11614297-11617337
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 11614297-11617337  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G27170						
					
						Parent gene annotation
						
							Structural maintenance of chromosomes protein 3
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G27170_circ_g.8 AT2G27170_circ_g.9 AT2G27170_circ_g.10 AT2G27170_circ_g.11 AT2G27170_circ_g.13 AT2G27170_circ_g.14 AT2G27170_circ_g.15 AT2G27170_circ_g.16 AT2G27170_circ_g.17 AT2G27170_circ_g.18 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G27170.2:12
AT2G27170.1:12
AT2G27170.3:12
AT2G27170.4:12

General Information
CircRNA Name	AT2G27170_circ_g.12
ID in PlantcircBase	ath_circ_015158
Alias	2:11614297-11617337
Organism	Arabidpsis thaliana
Position	chr2: 11614297-11617337 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G27170
Parent gene annotation	Structural maintenance of chromosomes protein 3
Parent gene strand	-
Alternative splicing	AT2G27170_circ_g.8 AT2G27170_circ_g.9 AT2G27170_circ_g.10 AT2G27170_circ_g.11 AT2G27170_circ_g.13 AT2G27170_circ_g.14 AT2G27170_circ_g.15 AT2G27170_circ_g.16 AT2G27170_circ_g.17 AT2G27170_circ_g.18
Support reads	2
Tissues	flower
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G27170.2:12 AT2G27170.1:12 AT2G27170.3:12 AT2G27170.4:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTTGATAGATCCAAGAGAAAACGTAGAAGAAGTAATAGGAAGAAGAAGAGACTCTACAAAAAC
TTACCAGATTAGGTTTGTTCACAGAGAAAGATCGAGctttttgatgtctggttttccttgtcaa
cttgactttcatacaaaggcttaatcgcctccagttccctcaaagaatcctgcatttctctttc
cactgtat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTTGATGTCTGGTTTTCCTTGTCAACTTGACTTTCATACAAAGGCTTAATCGCCTCCAGTT
CCCTCAAAGAATCCTGCATTTCTCTTTCCACTGTATTAAGTTGCTCAAGTGCATCATTCTGAAA
AAAAACATATGACTTCATAAGTGCACATTATCCAAATATACATGGAATATCAATTAGACATTCA
TTAGCGGATATGCGACGTTTAAATTCGTCCTGATGTATACTTCAAAGTTTTTAAGCAAATGTGA
GTAAGTATCAGCTTGTGACCACATGTGTCGCCACCAAGTTGGTAGTACCTTAGACTGAATATTT
CCAGTAATTCGATCCTGAAAGTCTTTCACATCAAGCTCCAGCTTTGTCTTTTTCTTTAACGCTT
TAGTTTGTTGAGCTTCAACAGTTTCTTTCTCCTTGTATAACGTCTGAAGCTCCTTTGTCAGTTC
TTTCAGGGATTCATCTAAAGACTTGGAGTCGTCCTGGGCCTTCTCCACTCTATCATACATTTTT
GTGGACTCTTCAGATGCCTTAGTTCGTGCAACTTCTACCTATATCGTGAACAAGAAAGCTCATT
TGTAATAAAGGTAAAGCTCAGCAATGAGTGAATAATAGAATAACATTTACTCAGAGAAGTGCAT
AAAACACAGAGTTTGGCAGAGCCCAATAAAACATTAATATAACTAGCACCAGTAACAGAAAGAC
CAACAATATTAAAAATTTATTTCATATTTCATAAGAAACCTCAATTTCACTGAACAAACAAGAG
AAAAAAAAAGATTAAAAACATGTGTGCCTAATTTAATTGGCTGACCTGTTCCAGTTTCTCCCGA
GCATCGTGAAGCTCTTTGTCGTAAATGGTGTATTCCAGTGATTTTCTCTGTTTGTCAAGTTGTT
GATATTTTCTGAGTTCTTCTTTCTCTTCGTCCAATTCTCTTAGTCTTTCATCCAAGTAGTGGAC
AACTTCGATGATCTGCTTCCGTTTATTTCCTGAAAGGCAAGTCATTTGGCCGTATTAGATTTTT
AAGGTAGCCATGCATGCATCTGAAAATTAAAGAGGTTTTACTATCACTGCACACTGATAACTTG
CCTGTTTCCTGCATAATTCTTAAACTCTCACGACGCCTCTCCTCATAAACACGAGTACCACCTA
TCTCTTTTAGCAGATCCAACCGTTCTATGTCTTTCATTAGTGTTAACGAGGCTATCTACAAACA
AACCACACATAAAAGGGATTTAAAATGTAGAATTCCGTTATATAGAAATCTGTTAGCCCATAGT
AGCTTTTTTCTGTGCTTGGAAATACAGGATTAATCCAACTATATTTTCTCTAGCAGGAGCTTAC
CTTTCCTTGTTGAACAACATAGTAAGGATTAGCACGAGAAAATCCAGCACTCTCCAATAAATTC
ATAACTTCACCTTTTCTGCAAGATTTGTCAGATTAATGTTCACCCATCTACGAAATAGGGCAAT
GGCAAAGAGTGTTCAAAATTAAAGATACAGTAACTCACGTAATGTGTTTCCCATCCAAGAAATA
ATCATCCTTCTTCAGGCCAACTGTTCTGCGCAAGCGTATTTCTTCCTTATCAACCTAGTGGAGA
AGCATAAACCCAAATCATGAGAACAACTGATATATACCATATTTGGAACTACATTGCATTTAGG
ACTAAACAGGTTTTTAACAGCCTTAGTCTTTTAATTTCAATTTGTATAGCACCCAAGTATGTTT
TGATAATATCATATTTACATAGGTGTGGCTAATCTTTACAAATTTCTGTCTTACGAAAAACACA
CCCTACATAGCTAAGAAAATGATGATGGTTTTATGAACCTGAAGGGAACTTTAGGATATAACTG
ATTGACATGAAGCCATGAAATTAACTTATATCAACCTATACACTAGACTAAAACATGACAGAAC
TAATATTTCCAAGCTTAGTAACAAAGTTTTCAGCATCTAGCTGACAGAACTACTGGTCGAATGC
AGTAGTATCTAACATGAACATCTATTTCACCAAACAAAAGAAAACATCCCATCCTGATTTTCAG
ACAGAACAAGTTTAGGAAATAGAATACTTACCGGGAACCGGTTGTCAGAATTATCAAACACAAT
CTCCACGAACGCGGACACGACTTGATGACCAGCACCTTCCTGTCCAATAATAACAAAGCTCAGA
GTTAGAAAATATTCAGGATAGCATGAAAAGCACTCAACGAAACAACACTAAAGCCTGTAGCAAA
CTTGTAGACATACATGGAGTAATGCATGCCTATCTTCACTGCGCAGATTTTGGTAGATGTCACT
CAATACAAAACGAATCGCTGCATCCAAAATCAAAGAATTCACTTAGAATCAAATATCGAAAACG
TCTGAAAAAAAAAGAGAAATGACAGACGATAATCACGAAGGCTAAAATCTCACCATGGAAGAAA
TTGCTTTTCCCAGACCCATTTGCCCCAACTACATCAAAGAACAAACCAGATCATCAGTTTCAGT
AACAAGTTTACACTAGAACGACTAACAATCCAGAAACTACTCAGAACAAGTGAATCAAAGAGAG
ACATTACCAACACAATTAACTTTGTTGCTAAACTCCTCAGTAGCAACTTGCTCTTTGTAACTCT
TAAATCCTTCGATTATAACCTTCACAAAATCAAATCCGAAAACAACAGAGGAAATTCAATAGAG
ATCATTTACCAGATAAACATCAGTTCCAATTAACAATAGAGTAAGAACAGTTCGCGAATTCGTA
CCTGCTTGATAAACATAGCGAAACCTCGCTAAGGTACTCGCACCTGTCAAAATCAACAGAAATC
CCAGAGATTATTAGGTCAGGCGAAGTAGATAAGCGATTGATTAGACTCAAATAGCAATCAAACC
TCCTAATTGAACTCAAAGTAGAAACGAAAGAGGTGATTACGAAGTTGAATTCTAGGGTTTGCTT
TGATAGATCCAAGAGAAAACGTAGAAGAAGTAATAGGAAGAAGAAGAGACTCTACAAAAACTTA
CCAGATTAGGTTTGTTCACAGAGAAAGATCGAG
						
					

			
		

Sequences
Splice junction sequence	CTTTGATAGATCCAAGAGAAAACGTAGAAGAAGTAATAGGAAGAAGAAGAGACTCTACAAAAAC TTACCAGATTAGGTTTGTTCACAGAGAAAGATCGAGctttttgatgtctggttttccttgtcaa cttgactttcatacaaaggcttaatcgcctccagttccctcaaagaatcctgcatttctctttc cactgtat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTTGATGTCTGGTTTTCCTTGTCAACTTGACTTTCATACAAAGGCTTAATCGCCTCCAGTT CCCTCAAAGAATCCTGCATTTCTCTTTCCACTGTATTAAGTTGCTCAAGTGCATCATTCTGAAA AAAAACATATGACTTCATAAGTGCACATTATCCAAATATACATGGAATATCAATTAGACATTCA TTAGCGGATATGCGACGTTTAAATTCGTCCTGATGTATACTTCAAAGTTTTTAAGCAAATGTGA GTAAGTATCAGCTTGTGACCACATGTGTCGCCACCAAGTTGGTAGTACCTTAGACTGAATATTT CCAGTAATTCGATCCTGAAAGTCTTTCACATCAAGCTCCAGCTTTGTCTTTTTCTTTAACGCTT TAGTTTGTTGAGCTTCAACAGTTTCTTTCTCCTTGTATAACGTCTGAAGCTCCTTTGTCAGTTC TTTCAGGGATTCATCTAAAGACTTGGAGTCGTCCTGGGCCTTCTCCACTCTATCATACATTTTT GTGGACTCTTCAGATGCCTTAGTTCGTGCAACTTCTACCTATATCGTGAACAAGAAAGCTCATT TGTAATAAAGGTAAAGCTCAGCAATGAGTGAATAATAGAATAACATTTACTCAGAGAAGTGCAT AAAACACAGAGTTTGGCAGAGCCCAATAAAACATTAATATAACTAGCACCAGTAACAGAAAGAC CAACAATATTAAAAATTTATTTCATATTTCATAAGAAACCTCAATTTCACTGAACAAACAAGAG AAAAAAAAAGATTAAAAACATGTGTGCCTAATTTAATTGGCTGACCTGTTCCAGTTTCTCCCGA GCATCGTGAAGCTCTTTGTCGTAAATGGTGTATTCCAGTGATTTTCTCTGTTTGTCAAGTTGTT GATATTTTCTGAGTTCTTCTTTCTCTTCGTCCAATTCTCTTAGTCTTTCATCCAAGTAGTGGAC AACTTCGATGATCTGCTTCCGTTTATTTCCTGAAAGGCAAGTCATTTGGCCGTATTAGATTTTT AAGGTAGCCATGCATGCATCTGAAAATTAAAGAGGTTTTACTATCACTGCACACTGATAACTTG CCTGTTTCCTGCATAATTCTTAAACTCTCACGACGCCTCTCCTCATAAACACGAGTACCACCTA TCTCTTTTAGCAGATCCAACCGTTCTATGTCTTTCATTAGTGTTAACGAGGCTATCTACAAACA AACCACACATAAAAGGGATTTAAAATGTAGAATTCCGTTATATAGAAATCTGTTAGCCCATAGT AGCTTTTTTCTGTGCTTGGAAATACAGGATTAATCCAACTATATTTTCTCTAGCAGGAGCTTAC CTTTCCTTGTTGAACAACATAGTAAGGATTAGCACGAGAAAATCCAGCACTCTCCAATAAATTC ATAACTTCACCTTTTCTGCAAGATTTGTCAGATTAATGTTCACCCATCTACGAAATAGGGCAAT GGCAAAGAGTGTTCAAAATTAAAGATACAGTAACTCACGTAATGTGTTTCCCATCCAAGAAATA ATCATCCTTCTTCAGGCCAACTGTTCTGCGCAAGCGTATTTCTTCCTTATCAACCTAGTGGAGA AGCATAAACCCAAATCATGAGAACAACTGATATATACCATATTTGGAACTACATTGCATTTAGG ACTAAACAGGTTTTTAACAGCCTTAGTCTTTTAATTTCAATTTGTATAGCACCCAAGTATGTTT TGATAATATCATATTTACATAGGTGTGGCTAATCTTTACAAATTTCTGTCTTACGAAAAACACA CCCTACATAGCTAAGAAAATGATGATGGTTTTATGAACCTGAAGGGAACTTTAGGATATAACTG ATTGACATGAAGCCATGAAATTAACTTATATCAACCTATACACTAGACTAAAACATGACAGAAC TAATATTTCCAAGCTTAGTAACAAAGTTTTCAGCATCTAGCTGACAGAACTACTGGTCGAATGC AGTAGTATCTAACATGAACATCTATTTCACCAAACAAAAGAAAACATCCCATCCTGATTTTCAG ACAGAACAAGTTTAGGAAATAGAATACTTACCGGGAACCGGTTGTCAGAATTATCAAACACAAT CTCCACGAACGCGGACACGACTTGATGACCAGCACCTTCCTGTCCAATAATAACAAAGCTCAGA GTTAGAAAATATTCAGGATAGCATGAAAAGCACTCAACGAAACAACACTAAAGCCTGTAGCAAA CTTGTAGACATACATGGAGTAATGCATGCCTATCTTCACTGCGCAGATTTTGGTAGATGTCACT CAATACAAAACGAATCGCTGCATCCAAAATCAAAGAATTCACTTAGAATCAAATATCGAAAACG TCTGAAAAAAAAAGAGAAATGACAGACGATAATCACGAAGGCTAAAATCTCACCATGGAAGAAA TTGCTTTTCCCAGACCCATTTGCCCCAACTACATCAAAGAACAAACCAGATCATCAGTTTCAGT AACAAGTTTACACTAGAACGACTAACAATCCAGAAACTACTCAGAACAAGTGAATCAAAGAGAG ACATTACCAACACAATTAACTTTGTTGCTAAACTCCTCAGTAGCAACTTGCTCTTTGTAACTCT TAAATCCTTCGATTATAACCTTCACAAAATCAAATCCGAAAACAACAGAGGAAATTCAATAGAG ATCATTTACCAGATAAACATCAGTTCCAATTAACAATAGAGTAAGAACAGTTCGCGAATTCGTA CCTGCTTGATAAACATAGCGAAACCTCGCTAAGGTACTCGCACCTGTCAAAATCAACAGAAATC CCAGAGATTATTAGGTCAGGCGAAGTAGATAAGCGATTGATTAGACTCAAATAGCAATCAAACC TCCTAATTGAACTCAAAGTAGAAACGAAAGAGGTGATTACGAAGTTGAATTCTAGGGTTTGCTT TGATAGATCCAAGAGAAAACGTAGAAGAAGTAATAGGAAGAAGAAGAGACTCTACAAAAACTTA CCAGATTAGGTTTGTTCACAGAGAAAGATCGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.125815132

Conservation Information
Conserved circRNAs	NA
PMCS	0.125815132

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G27170_circ_g.12

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