Plant Circular RNA Database

Detail information of Os05g0149600_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0149600_circ_g.2
					
						ID in PlantcircBase
						osa_circ_026582
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2835882-2837893  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0149600						
					
						Parent gene annotation
						
							Similar to CULLIN1-like protein 1. (Os05t0149600-01);Similar to 
predicted protein. (Os05t0149600-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0149600_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0149600-02:1
Os05t0149600-01:8

General Information
CircRNA Name	Os05g0149600_circ_g.2
ID in PlantcircBase	osa_circ_026582
Alias	NA
Organism	Oryza sativa
Position	chr5: 2835882-2837893 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0149600
Parent gene annotation	Similar to CULLIN1-like protein 1. (Os05t0149600-01);Similar to predicted protein. (Os05t0149600-02)
Parent gene strand	-
Alternative splicing	Os05g0149600_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0149600-02:1 Os05t0149600-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCCAACAAACCTTGTCATCACGAAGCAATGCAAAACACCCAGAATGCTCCTTCTCCAACAGGGG
AGTTGCATATTGTGCAAGCAATTCATTTTGCACTTTcatctcagcaggaaggttaatatcgaaa
gtcttgtaacttggccagaatcctgttgtcaaaacagtgacagccaagtctatcccaggattca
actcctga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATCTCAGCAGGAAGGTTAATATCGAAAGTCTTGTAACTTGGCCAGAATCCTGTTGTCAAAACA
GTGACAGCCAAGTCTATCCCAGGATTCAACTCCTGATGTGCAGCCACAAACTCTTCAAACTTAG
TTTGATGGTCCCTTGCAACAGTAAGATCAGTAACCATTCCCTCCATTTTAGAAGTAAATTGTCC
ACCACACTGCTGCTTGAGTTTGGTAAGTATGCTTCTTTCATGTTCATCATTGGCACTCTTATCA
AAAAGCAATCTCCTTGCAAGTTTTTTCCTGCAAATAGCTCCACACATGAAGCAATATGAATACA
AAGTCCAAAAAGTAATGTTTCTTAAATTCAGGAGGTATATAGGCTTAAAACAAGATAACACAAC
ATTACCTGTAAAACTCAGCAAAGAGGTCTTTATCGCTGATGTATGCAAGCAATCGCACCACCTG
AATCATATTTCATTTTCAGCTTAGATTTCCTTCTACAAAAATTTAATAATGGTAGCAAAAGAGA
AGGGAGAACATGCACCTTCTCAAGAGCATCTTCGATGGCTTCATCACTGAGCTTTTCACTGCAA
CCTTTCTTCAGAATATTGTCACAGAAGGTGGCAAGCAGTTCAGCACTTGAACTGCCAGAGACAC
CCTTGTTACAGAAGACCTCGAATGCTTCTTTAAGGGCCTGTAGAATGAGAAGTTTAAGAATGAG
GCATCACATTTGACTTAATGAACCAATGGTAACAACAAGGAATAGGAATGTGTCGATTGGCAGA
CCTTATGAAAGAGGGTGTGACCCTGGAAACATTCTGTGACATAAGCTACATACTTGTCATGGAG
CTCAATGATTTTCCAGACAAAAACCTAAAAAGAAAATCACATGTTAGGTGGAAAACATTTCATC
ACCAACGAAGTGCAAGAAGTTCAAGTTGTGTACCTGTTCCTGCATACCAACCATGTCCTTTTTC
TCGGGCTGTACAAATAGTTGATATTAGAATATTAGCTAAATACCAGTTTGTTGCAACGAATTTG
AAATAATCAAAAGTTCTGAACTTCAAAAGATCTATATATTTCTCAGGGAAACATATAATTGTAA
TCAAATATAAACCCACAAATAATCTAACTACAACTCTACAAGCTACATGCAAAAACAATCTTAA
AGATATAATGTTTCTCAGGGAAACATATAATTGTAATCAAATATAAACCCATAAATAATCTAAC
TGCAACTCTACAAGCAACATGCAAAAACAATCTTAAAGAATCACATAGCATCCCACCAACCGTC
ACCAGTAGGTTCTTTATACAGTAGAGCACAAAAAACTAAATCAAATAACATGAATTTGAATCAC
TAATAATAAATGCAAGGGAATCAAGCATTTGAGTGTAACCAGAAACAGCATATACCGTGTCAGG
AATTGTGCACACTAGGAAAACTATAGAATAAAGGACAATTTTACAGGATTAAATAGAAAGAGAC
AGTCAGCGACCTCTGTTTGATCAACTGAAACCAGTTTAAAGGGAGCTAATTTAAAGCACTAATC
TGGCATGCACAAATCACAATCCTAATAACCATACTTTGATGGAACACAAGTAAGAAAAATGCTA
AAATAAATACCGCACCTTCTTATTACTAGCAGAATCTTCTGCTTGCTTGACCAAGGCTGTGCCC
TCATTTGTAACATGCTGCAGAGAAGTAATAATTTAATCAGAATGCACAAAAAGGTTATAGGGAA
TAAGCAGACCAATTTTGAGGCAATGAGGCAATACCGTTTTAAACATGTTAGCAATAGGTTCTAG
ACCGCGGTTAATTTTGGAGAAGAGCCTGTACATCCTAGAAAGGTCTTCCTCCTGGAGAAGATAA
TGGGTATTCAATATTATTTGTTTTCATGATATACGGTTAAGAAATGAATCATGTTGTCCAACAA
ACCTTGTCATCACGAAGCAATGCAAAACACCCAGAATGCTCCTTCTCCAACAGGGGAGTTGCAT
ATTGTGCAAGCAATTCATTTTGCACTTT
						
					

			
		

Sequences
Splice junction sequence	TCCAACAAACCTTGTCATCACGAAGCAATGCAAAACACCCAGAATGCTCCTTCTCCAACAGGGG AGTTGCATATTGTGCAAGCAATTCATTTTGCACTTTcatctcagcaggaaggttaatatcgaaa gtcttgtaacttggccagaatcctgttgtcaaaacagtgacagccaagtctatcccaggattca actcctga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATCTCAGCAGGAAGGTTAATATCGAAAGTCTTGTAACTTGGCCAGAATCCTGTTGTCAAAACA GTGACAGCCAAGTCTATCCCAGGATTCAACTCCTGATGTGCAGCCACAAACTCTTCAAACTTAG TTTGATGGTCCCTTGCAACAGTAAGATCAGTAACCATTCCCTCCATTTTAGAAGTAAATTGTCC ACCACACTGCTGCTTGAGTTTGGTAAGTATGCTTCTTTCATGTTCATCATTGGCACTCTTATCA AAAAGCAATCTCCTTGCAAGTTTTTTCCTGCAAATAGCTCCACACATGAAGCAATATGAATACA AAGTCCAAAAAGTAATGTTTCTTAAATTCAGGAGGTATATAGGCTTAAAACAAGATAACACAAC ATTACCTGTAAAACTCAGCAAAGAGGTCTTTATCGCTGATGTATGCAAGCAATCGCACCACCTG AATCATATTTCATTTTCAGCTTAGATTTCCTTCTACAAAAATTTAATAATGGTAGCAAAAGAGA AGGGAGAACATGCACCTTCTCAAGAGCATCTTCGATGGCTTCATCACTGAGCTTTTCACTGCAA CCTTTCTTCAGAATATTGTCACAGAAGGTGGCAAGCAGTTCAGCACTTGAACTGCCAGAGACAC CCTTGTTACAGAAGACCTCGAATGCTTCTTTAAGGGCCTGTAGAATGAGAAGTTTAAGAATGAG GCATCACATTTGACTTAATGAACCAATGGTAACAACAAGGAATAGGAATGTGTCGATTGGCAGA CCTTATGAAAGAGGGTGTGACCCTGGAAACATTCTGTGACATAAGCTACATACTTGTCATGGAG CTCAATGATTTTCCAGACAAAAACCTAAAAAGAAAATCACATGTTAGGTGGAAAACATTTCATC ACCAACGAAGTGCAAGAAGTTCAAGTTGTGTACCTGTTCCTGCATACCAACCATGTCCTTTTTC TCGGGCTGTACAAATAGTTGATATTAGAATATTAGCTAAATACCAGTTTGTTGCAACGAATTTG AAATAATCAAAAGTTCTGAACTTCAAAAGATCTATATATTTCTCAGGGAAACATATAATTGTAA TCAAATATAAACCCACAAATAATCTAACTACAACTCTACAAGCTACATGCAAAAACAATCTTAA AGATATAATGTTTCTCAGGGAAACATATAATTGTAATCAAATATAAACCCATAAATAATCTAAC TGCAACTCTACAAGCAACATGCAAAAACAATCTTAAAGAATCACATAGCATCCCACCAACCGTC ACCAGTAGGTTCTTTATACAGTAGAGCACAAAAAACTAAATCAAATAACATGAATTTGAATCAC TAATAATAAATGCAAGGGAATCAAGCATTTGAGTGTAACCAGAAACAGCATATACCGTGTCAGG AATTGTGCACACTAGGAAAACTATAGAATAAAGGACAATTTTACAGGATTAAATAGAAAGAGAC AGTCAGCGACCTCTGTTTGATCAACTGAAACCAGTTTAAAGGGAGCTAATTTAAAGCACTAATC TGGCATGCACAAATCACAATCCTAATAACCATACTTTGATGGAACACAAGTAAGAAAAATGCTA AAATAAATACCGCACCTTCTTATTACTAGCAGAATCTTCTGCTTGCTTGACCAAGGCTGTGCCC TCATTTGTAACATGCTGCAGAGAAGTAATAATTTAATCAGAATGCACAAAAAGGTTATAGGGAA TAAGCAGACCAATTTTGAGGCAATGAGGCAATACCGTTTTAAACATGTTAGCAATAGGTTCTAG ACCGCGGTTAATTTTGGAGAAGAGCCTGTACATCCTAGAAAGGTCTTCCTCCTGGAGAAGATAA TGGGTATTCAATATTATTTGTTTTCATGATATACGGTTAAGAAATGAATCATGTTGTCCAACAA ACCTTGTCATCACGAAGCAATGCAAAACACCCAGAATGCTCCTTCTCCAACAGGGGAGTTGCAT ATTGTGCAAGCAATTCATTTTGCACTTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015842 						
					
						PMCS
						0.162648314

Conservation Information
Conserved circRNAs	osi_circ_015842
PMCS	0.162648314

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2837838-2836504(+)
2836719-2835915(+)
2837822-2835898(+)
2837708-2835884(-)
						
					

						Potential amino acid sequence
						
							MLLLQQGSCILCKQFILHFHLSRKVNIESLVTWPESCCQNSDSQVYPRIQLLMCSHKLFKLSLM
VPCNSKISNHSLHFRSKLSTTLLLEFGKYASFMFIIGTLIKKQSPCKFFPVKLSKEVFIADVCK
QSHHLLKSIFDGFITELFTATFLQNIVTEGGKQFST*(+)
MIFQTKTCSCIPTMSFFSGFLLLAESSACLTKAVPSFVTCVLNMLAIGSRPRLILEKSLYILER
SSSLSSRSNAKHPECSFSNRGVAYCASNSFCTFISAGRLISKVL*(+)
MQNTQNAPSPTGELHIVQAIHFALSSQQEG*(+)
MYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQEQVFVWKIIELH
DKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIE
DALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGM
VTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMKVQNELLAQY
ATPLLEKEHSGCFALLRDDKEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSA
SNKKPEKKDMVGMQEQVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSS
AELLATFCDNILKKGCSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSAN
DEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTG
FWPSYKTFDINLPAEMKVQNELLAQYATPLLEKEHSGCFALLRDDKEEDLSRMYRLFSKINRGL
EPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQEQVFVWKIIELHDKYVAYVTECFQ
GHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIEDALEKVVRLLAY
ISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQT
KFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMKVQNELLAQYATPLLEKEHSGC
FALLRDDKEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVG
MQEQVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNIL
KKGCSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLK
QQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINL
PAEM(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2837838-2836504(+) 2836719-2835915(+) 2837822-2835898(+) 2837708-2835884(-)
Potential amino acid sequence	MLLLQQGSCILCKQFILHFHLSRKVNIESLVTWPESCCQNSDSQVYPRIQLLMCSHKLFKLSLM VPCNSKISNHSLHFRSKLSTTLLLEFGKYASFMFIIGTLIKKQSPCKFFPVKLSKEVFIADVCK QSHHLLKSIFDGFITELFTATFLQNIVTEGGKQFST(+) MIFQTKTCSCIPTMSFFSGFLLLAESSACLTKAVPSFVTCVLNMLAIGSRPRLILEKSLYILER SSSLSSRSNAKHPECSFSNRGVAYCASNSFCTFISAGRLISKVL(+) MQNTQNAPSPTGELHIVQAIHFALSSQQEG*(+) MYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQEQVFVWKIIELH DKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIE DALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGM VTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMKVQNELLAQY ATPLLEKEHSGCFALLRDDKEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSA SNKKPEKKDMVGMQEQVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSS AELLATFCDNILKKGCSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSAN DEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTG FWPSYKTFDINLPAEMKVQNELLAQYATPLLEKEHSGCFALLRDDKEEDLSRMYRLFSKINRGL EPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQEQVFVWKIIELHDKYVAYVTECFQ GHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIEDALEKVVRLLAY ISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQT KFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMKVQNELLAQYATPLLEKEHSGC FALLRDDKEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVG MQEQVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNIL KKGCSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLK QQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDLAVTVLTTGFWPSYKTFDINL PAEM(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0149600_circ_g.2

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