Detail information of BGIOSGA029605_circ_g.1


General Information
CircRNA Name BGIOSGA029605_circ_g.1
ID in PlantcircBase osi_circ_018553
Alias Chr09:19151678_19156374(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 16508324-16513020  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA029605
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA029605_circ_igg.1 BGIOSGA029605_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA029605-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATGAGTGGAGGTGCATCAAGAGGACAACCATCTGGTCCACGACAAAGAACACTTGCAAGG
TCAAATCGAAATCCATCTATGTGATACTCCTCAACCcctgagaaatcattaaagctacatggaa
gtttttcatttgtcttgaacgcagacttaacacattcagatcatttgtttctcctgttacagaa
caagagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAGAAATCATTAAAGCTACATGGAAGTTTTTCATTTGTCTTGAACGCAGACTTAACACATT
CAGATCATTTGTTTCTCCTGTTACAGAACAAGAGCATCAATTCTAACATCAAACATTTCGCATA
GCATTAGGTTAAAAATAAGGGTTAATTGGATCCATGCCACTACAAATGTGGCAAATCAAAAAAA
TGCCACACATATTCACGTTATCGGCTGGATGCCACTGCAAATTTTTAAAATAAGAACCATGCCA
CTCCATCACGATTTCCGTCCTCCTCTCTCTCTCGCCGTCATCCTCCTCTCTCTCTCACTTCTGC
TGCCCCCGGACGCGTGTGAGCAGCTCAACCACCGGAGTCGAAGCCGATGACGCGCACGCGACAA
AACGCATCGGCTTCACGCGGCAAAACGGAGAAGAGGATGGGGAGCTGGCGCGACGGCTGGCACG
GGCGGAGGACAGCCCGGCGCGGTCGCGGCCGGGCCTGACGGGGTTCGGCGCGGAACGGAGCTCA
GGCAGAAACACCCAACGAGCTCAGGGAGTAGCTAGCTAGCTGCTACAGATGCAGCGCGCGAGGC
TAGCTAGCTAGCTAACTAAACCAATCAACATACAACCATCGATCTTTGCCGCCGCCGACGAGCA
CGGTCGCGGAGGGGCATGGCCGCCGTCGAGGAAGGTCATGGAGGCGGGCGCGGGCGTAGCCGCC
GCCGGCGAGGACGCTCGCGGGGAGGTCGGGGAGGGGGCATAGCTGCTGCCGAGGACGGCCGTGG
AGGCGGACGCGGGCATAGCCACTACCGGCGAGGACGGTCGCGAGCGAGGCCGCCGCCGCCGACG
AGGACGCTTCGCGGGGAGGTCGCGGAGGGGGCGCAGCTGCTGCCGAGGATGGTCATGTGGAGAG
AGGAGATTGGCGTCGGCAGCACTAGTGACAAAGCTTGGGGCCAACAGCGGCGGAGTTCGAGGCT
CGACGCCTCCTCCATCGGCAGCAACGACGAGCGGCCCTCCTCGCCAGATCTGGGCGGAGGCGGT
GCGGCTCGTCGACGACCACGACGAGGACAGCAACGGCGGCGGCGGCTCCCGAGCTCTCCCGCGC
AGATGAGGTCGACGGCGGCGGGTCCACCGCAGAGATGGTCAACGACGACGGCTGCAACGGGAGA
GAGAGGAAGTCGGCGAGGAGGTCGCGGAGGGGCGCGGGGAGCGGACGCGGGCACGACCGTCGCC
GGTGCCGTGCTGCCATCCACCACCGTGCTGCCGTGCCACCGTGCGCCATGCTGCCATCCGCGCC
CGCCTTCGTACTGCCGTGCTGGTGCTGCCGTCGAGACGAGGACGACGAGAGGACGAAGACGGAG
ACGGCGGAAAATGTGACGGATTGGACGGAAATCGTGATGGAGTGGCGTGGTTCTTATTTTAAAA
ATTTGCAGTGGCATCCAGCCGATAACGCAAATATGTGTGGCATTTTTTTGATTTGCCACATTTG
CAGTGGCATGGATCCAATTAACCCTAAAAATAATTATTTCTGATTCAAAGAGGGATAGCCATCT
ATGGTTGCATTTGGAAAGTTCTGCACAGCTCATAGAGCTATTTGGATCCATCTTGACATTGAAG
CTTCACTACTAGGGGCAATCTTTTAGTTCTGTTGAATTACAAGACACTAAATTTCAACAAAATC
AATACAAGACACTAAATTTCAACAAAATCAAACTATGTCATTCTCTTTATGACTATACCTTTAA
TTCATACAAAGGGTTGTTTTAATAATAAACTCGACCAAGTTTTCTATCTTTACAGTACCCTACA
TCAGTCAGATGTATCAATTTGATGGGATATGAAAATAAACATCTTTTTGCAGTTTCATGGAATC
ATGATTTCAATGTACAAAAGAAAATAGATATTCGGTAAAGCAGGTACCTTCAACACCACAGTTC
CAGCTAAAGTTGTCATTGCATCCATCACAGCCACCTTCTCCATTAGCATCATTGTGCTATATGA
TTTTGATAAAAAGAAGGCAGATTAGCATACACTTCACAGTATAAATAAATGATCTTAACTAAAC
TGCTTAGCTTACTCCAGTTACCTTTAAGTTGTAAGAAACAAGGTCACATAAAGTAAATCCATCA
TGTGCAATCACAAAATTTACACCATGGTAAGGCTTCCGCTCGTTCACCTGCCACATCAGGTGAA
TTTTATTTTACATATTTTTGTTTCTTGACAAAAAATAACTGAGTCTGAACCCCTTCAGCGTAAC
AGTAGTTCTTAAAAATTTGTCCACAGAGGTTCCTTACACATCCTCACAAAATGAAATAATAGGT
GGCATCATACCATACTGTGTTTTGCACTATCAAATGGTATGTCACTAGACCCTGAATACATTTA
TATCCATTAAACAATTGGATACTGGAGAAATCCTACTGAACTAACACAATTGACATGATAGAAT
TTGGGGCACGCTAAATGTTGATGATGACCTGTGCTATAACAGTGATACAAAAGTAACAAGCATG
TAATTAAACCTAAACTTATTAGCAATAACTTTGGAAGCCGCTCTTGTTTGGAAATGGATTTTTA
TTTTATTTATTTTGTGTGTGGGGGGGGGGATCAAAGTTCAAAAACAAGCGATATCCTAAGCAAA
TGGATAAAAAATAACAGTAAAGGGAAAATAACATCTAAAAGAGGGGGACCTGATAGAGATCAGC
AGATCCAGACACACGAGTTGCAAACACCCCCTTCATACCAGGGTCACCCTGAGAAACAACTCCA
AATGTTTAGCAGCATCCAATCAGTCATTCGGTCGTTATTATAGAAACAAGAATAAAAGAACACA
AACAGAAGAATTCTCATGGCTATGCTAGGCAAGCACTGATAAAATGCAGAATGTTCAGTAAATT
CAGATCTTCAGTTGAAAAAACTCACTGATGTTTGAAATGGTTAAAAAAAATTATGCTTAAGTTC
TGAAGGAGATCATCTAAATATTTGGCTCAAGAATGGAGTTATGGATAGCCAAGATCAGAGTTTG
GGAAACTGCAGCCACCTAATTCTACCCCTATGTTTCAGTAACCTGGTAATCTTTACACAACTGG
TACAGAGCTATTGCATAAAAGTATGTTGCCATTTTCTCAAATAATATGCGGAACTGTGATCGTA
TGCTTCAGAATTGCCCATTAAATTAAATAAAATACTGATTTTGCAAGGGTACTGATCCTATATC
TAGTTAAACATTTAACAAAATCTCCATGTTTCCTAGCCATTGGCTGTTCCACAATAACCTAAGT
TTGCCGCTAATGTTCATACACCATCAAGGACAATTAAAACTAAATATAGGTACAGTGAGAAGCT
AAACTTCATTAACATGCTCAGTAAAATAACTATCCTATGGCATGGTTAATTAAAATACTCTGGC
AGAAAGGGATGAGGCAAGGGAATGATAGATTAGCATAAGGGCATAACAATCCTATTCCTCAGCA
GTAATTCCTGATATACTGCCATGATGAAATCTCTACCATAAATTACAGGTGAGTACAATTTTTC
TTATCTGTATTTTCTAAAAAATCTTCTCTCCCGGCATATTACCTTAATAAATCTTCGAAGATCA
TCTCTGTATTTGCCGTTCCATTCAGCCCACCTGCAAGAGGAATGTTAAACATGATCACCATACC
TTTAAAAATAAATGAAACTCATTATAGAATAACTGATCTGTGTATGCATGGTAGGGAAAGGTCA
CTGAACCGCACAATGAAGCATGTTTGCCAAGTCCAATGAGAAAAGTGATACTAGCAATAATTCT
CTCATTTCAAGAATTCAGTTGTTAAGTACTTTAGGAATGAGCATCTCAGCATGATATTATCCAT
AACAGAAAATAGTTACTGTTTTGTGTTACTGTATCACCAAATCTTTAGTCCTAAAAGAAGCAAG
GATAAAACATCTATACCACCAAATTCTTTTTATAGAAATATAGAAGTGTTCAAATCACCTGTCC
CAGTTAGGGAAACGCCCTACGAGATAAAGGCCGCCGCAATCCCAAGGTTCAGCAATGATCTTAC
ATCTAGATAATACAGCATCTTTGGCAATTTCCTACAACCAAATAAATTAATATGAAGAAACATA
AAAGCCACTAGTCTCGATACATCAACGTGAGTTGTATGACCAGAGATTGATGGATTAGGATTTA
GATGGTCTTGAAAAGGTGGAATTTGTCATAAATACAATTTTCTAACGTTTGAGGGGGGTCACTA
AAAAAACTTTCAAATGAACCTCAAGAGCCCTACATCTAGTCCATACTGTATCTTATATAGCTGC
CCACATTGCAAATTTTCATGATTGCATTCCTGTGAGCTTGCACTAGATATGTATTCAATGAACA
AAACCATGCAAACAAGAAAACAATCAACAATAGTGCAAAGTTGATTAGAATTGATTGCTGGAAG
TTCAGTACTTCAGTACATCATAATTTGCATCCAATCATCCATATAATGTAACGTACGGGTTGTT
TTTACATGAAATCTATTAACTTCACTTATTTAGACAAACAAAATTCGGTCTGCACAGGCTTGGT
AAGCAGCCATACATATTTAGTGTTCAAACCTAAAGTCTGCATCTACATTATACCTTGATGAGTG
GAGGTGCATCAAGAGGACAACCATCTGGTCCACGACAAAGAACACTTGCAAGGTCAAATCGAAA
TCCATCTATGTGATACTCCTCAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021