Detail information of Zm00001d049405_circ_g.1


General Information
CircRNA Name Zm00001d049405_circ_g.1
ID in PlantcircBase zma_circ_001646
Alias circ743
Organism Zea mays
Position chr4: 29550932-29551051  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d049405
Parent gene annotation Autophagy 8e, mRNA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d049405_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCGCTTCCGCACCACGTACACAAACTGTCCCACTGTGAGGTCGGCGGGGACAAGGTACcctg
ttggtgggagggtgttcttcacgaagatgaagatcgccttctcggcgctgagcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTGGTGGGAGGGTGTTCTTCACGAAGATGAAGATCGCCTTCTCGGCGCTGAGCTTGATGC
GCTTCCGCACCACGTACACAAACTGTCCCACTGTGAGGTCGGCGGGGACAAGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.416110417
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b