Detail information of Os07g0575100_circ_g.5


General Information
CircRNA Name Os07g0575100_circ_g.5
ID in PlantcircBase osa_circ_034499
Alias NA
Organism Oryza sativa
Position chr7: 23260895-23263711  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0575100
Parent gene annotation Similar to predicted protein. (Os07t0575100-00)
Parent gene strand -
Alternative splicing Os07g0575100_circ_g.2 Os07g0575100_circ_g.3 Os07g0575100_circ_g.4 Os07g0575100_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0575100-00:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCAATTGCATTGATTGCAGCCCAACGCACACGTGCATGAGGATGTTGAAATCCATTCAAAAT
CATCGAAACAACCTGCTCCAGATTTTTAAGCATCACctgcatgcactcatttaatgaatcaagc
atggatgaacacatctcagtttctggttcctgtatagtaattcaaaagaaaacagctgttagcg
ttgaatag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATGCACTCATTTAATGAATCAAGCATGGATGAACACATCTCAGTTTCTGGTTCCTGTATA
GTAATTCAAAAGAAAACAGCTGTTAGCGTTGAATAGAAAAACCATCCACATGTATAGAGAAGAT
TTTGCATAGACCTTGTGCAGCGCTTCAACAAGAGCTGGAATTATGTAGTCAGATAATTGTTTAA
CATAAGATTCATCGCGTCCTTGAGCCAGCCCCTTCTCAACAGCCAATTTTGCAGAACGTAGTAG
TTCAGGCATAGCTGCATTGTTGTTGGAACTATACTTTTAAAATGCAAATCCATAAGGCAAAAGA
TAAAATCATACTAAAACATCAAATACCTGCAACAGCAGCTCTCCTCACTTCCTCATGAAAGTAA
AATTTAAGGAGTGGAACCAATGTAGGAGCAACCTACGTGGAATTTGACCACCAACATATGACAC
TGAGTGGCAATTGAGAAATTAGACATTTAACATGCTGGTATGATATCAAACCTGATCAATCCAT
GGGAAGAACCCCTCCTTGAGTTCATCAGCATAACAGCATAGCATGTTGCAAGCTGTTGCTTTCT
CTTCTAGTACACTAGTTCGGATACCTATTCTTTTGTCGCCAAGCGTAATTGTTTCAATGCTGTA
TTGAGTGAAAAAGATTAGGGGCAATATTGCAGAACCAACAAGAAGCTAAAAACAACCACCACAC
CTCACATAAAAAAGGATGATATATTTCTGAACAAATCAAATTGCAAAAGAAAAAAGATAATCAA
TAGGGAAACATATTACAAGCATAAGGTAGCTATTGCAAGTTGCAGTCCCACTAACCCAAAAAAA
AAAAGGTTGATAACGGAAATATAAACAGGCACGAGTTTCACGAAAAAAAGGAACCTTCTATGAA
CGAAGTGTATGTAATTACATTCAGTATGGTATAGAAACAAATAGTACTTCTTAAGAAAGAATGA
ACCATAGATAAATTTAAATAGAATGCCTCTGACACAGCATCAATATTAAGGGCATATTTAATTC
AGTGGATAAAACATAGCAATTGAAGAAGATGCACAAACCTATCATCATCTGATTCTATATCATC
ATCAGATTCAGCTGAAGTAATTGTGACATCAGGCTTCAGTTGAGCAGACTGAAGCAGTGGTGGC
ATAACAACGTTCATGTACGGAAGAAAATCCTGCCCGAGACATTTGCATAACCTGGCCCAAGCCT
GTCACATAAAGGAGAAAATGTTACAAAGGATCTGAATTTTATTATGATTAATTCATAATAGGTT
TTATGTGTACCTGAAGCATGTAGCTTGTTATTGGATCATCATTTTCCATTGTAGTTCCTTGCAA
ACTCATAAGTACTTCCATGACCTATCAATCAATGTGTAGATTAGAAAAGTGCATGCATAGAACA
TAGCATACAGAACAAAATTACAGTGGAGAAGACACAATTACCTGCTTTGCGTCATCCCTGAACT
TATCCTTGCCTACAGCCATTCCGACCAGACTTATACACTCCATAGACTTGGCACGAAGCATCCT
ATTGGACTTATCAGTTGCATTCATTAAAATAGCTTTCAGGTATGGCATCACTGCATCATAGTAT
TTTTTGAAGTGCTCCTGCAAGACAAGTACACCAAAATTTAACACAATATTATAAACTCTCATTA
ACCATCAAGATAAGTATAAAAGGTAATGTTGCGTCCCCCTCCCCCTATAAGAAATTAAGCTAAC
TTATACATGGACAAATTACCTGCGATGAATCAGCTACTGATGCTAAAGCTGTCAATGCTCCCTC
TTGCACCATTTGCTTGCCGTTCTAAAGCATAAGTACAATATATTAGCACATGTTCTACTAGTTC
AAAAAAATAACACTAAAAGACAATAAAATATATTTAACTGGTGAGGGAGGTGGATACCTGAAGA
AGAACAAGTAATTTGGTAACAATTCCATCCAGGTAAGGTGTCAGAATTTCAGGCGTGCAATTCT
CACTGAAATTCAAGATAGCTGATGCAGCATGTGCCTGTGAATGATAGTAACACAGCCAGACATA
TTATTTCCTAATAAGCATAATAAAAGTAGGTTAAGTTTGTATGTATAATAGGCACCCCAAAACT
GCCAAAACCTTGAAAACTGTATATCAAAAAGTAACACTTGAAAATTGTATATGGAACAAAAGTT
CATTAAAAAACCTGAATTAATGTGTTTATAAATCATACTTCATGCCATTGACGTGTTACATATT
TTTTGAATATAATGCCAAATTATCTTATTTAACAAGGATAGAAACAAAATCTGAAAGACAGGGA
TAGTTCGTGTTGATGTTCATCTAACCCCACGAAAGTAAACTTAGCCCAACTAGAACATGGATAG
ATAAAATAATTTAACTAATTGAAGAACACTCCTAGATGTCTAAGTAGATCAATGGAGCATTATC
TTTTATGTAAAGCCCACTATCTACTTTGAAGCATTTTCTTCATAAAGTCTAACAGGTAAGTGAG
TCAATAAGCGTTGTCCTTATGAACATTGTAGGCCACAAAAGATGTTATAAATAAAGCAAAGAAC
ATGTGTAAAAGGGTGTGCTAGATCAAGTCTAGCACTAATATTTGAACACTCACTTGCACCCGTG
GATTCTGAAAATCATCCATGGCGTTTGCCAATGCAGGCAGCACCTGCTGGTGATAATTAACTTG
CAAGTCTGGACCCAAATCAGTAGATAGCTGACCAATTGCATTGATTGCAGCCCAACGCACACGT
GCATGAGGATGTTGAAATCCATTCAAAATCATCGAAACAACCTGCTCCAGATTTTTAAGCATCA
C
Conservation Information
Conserved circRNAs NA
PMCS 0.142934008
Functional Information
Coding potential Y
Potential coding position 23263650-23260909(+)
23263710-23260897(-)
Potential amino acid sequence MRMLKSIQNHRNNLLQIFKHHLHALI*(+)
MLKNLEQVVSMILNGFQHPHARVRWAAINAIGQLSTDLGPDLQVNYHQQVLPALANAMDDFQNP
RVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVADSSQEHFK
KYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGTTM
ENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIESDDDSI
ETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRRA
AVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLDSLNECM
QVMLKNLEQVVSMILNGFQHPHARVRWAAINAIGQLSTDLGPDLQVNYHQQVLPALANAMDDFQ
NPRVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVADSSQEH
FKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGT
TMENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIESDDD
SIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVR
RAAVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLDSLNE
CMQVMLKNLEQVVSMILNGFQHPHARVRWAAINAIGQLSTDLGPDLQVNYHQQVLPALANAMDD
FQNPRVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVADSSQ
EHFKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ
GTTMENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIESD
DDSIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEE
VRRAAVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLDSL
NECMQVMLKNLEQVVSMILNGFQHPHARVRWAAINAIGQLSTDLGPDLQVNYHQQVLPALANAM
DDFQNPRVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVADS
SQEHFKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS
LQGTTMENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIE
SDDDSIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFH
EEVRRAAVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLD
SLNECMQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017