Detail information of BGIOSGA016810_circ_g.1


General Information
CircRNA Name BGIOSGA016810_circ_g.1
ID in PlantcircBase osi_circ_014591
Alias Chr04:27089483_27090464(MH63RS2), Chr04:27112042_27113023(ZS97RS2), Chr04:27089483_27090464(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25260310-25261291  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016810
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016810-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCTTCCGTGTAAACGAGGGCTCGACGAACTTCTGGCTGTCACTGCTGGTCGAGTTCGAGGAC
GGCCAGGGCGACATTGGATCCATGCAGATAAAGCAGggcggggcgtgtgggtatggatcgctgg
tggacgtggtgccgatgaaggcgcgggtggggtcggtgagcccggtgctgttcaaggacggcga
gggctgcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGGGGCGTGTGGGTATGGATCGCTGGTGGACGTGGTGCCGATGAAGGCGCGGGTGGGGTCGG
TGAGCCCGGTGCTGTTCAAGGACGGCGAGGGCTGCGGCGCCTGCTACAAGGTGAAGTGCCTCGA
CCACGGCATCTGCTCCCGCCGCGCCGTCACGGTCATCGTCACCGACGAGTGCCCCGGCGGGCTG
TGCGCCTTCGGCCGCACGCACTTCGACCTCAGCGGCGCCGCATTCAGCAGGATGGCGGTCGCCG
GCGCCGGCGGCCACCTGCGAGACCGAGGCCAGCTGTCGGTCGTCTACAGAAGGTGAGCAGCATG
CAACAACGTAACCCGATTCTTACGGATGGCATGAATCCTTTTGGAGAGATGAGCAGCGGCCATA
ACACTTGGCCCGTTACGATGTGTATCTACAACCTCCCCCCTAGCTATGCATCTACAGTAGGTTA
TTAGGAGAGACCACAGGCAAAGTAAATGCATGGTCACTGGACCCCTGCCTGAAATTTTTTTTCT
AGCACAGTGATTTGCCTACGCGCATACAGGGAATTAAAATCGTCCAGAGTTGAATGTGCTAGCT
CAGCTCCTTATTTAGATCTGCCTGCTGCTGAGTTACACATGCCTCTGCAGCTCTGCTTGATATA
ACTCAGTCAGAGCAACAGATATCCAAATGGCATTTAACCTCTTGTCTATAATTCCTTTGCCAAT
GCTGCTTCTCCGTTCATCAGTCTACCTGATCATAGAAAAGCTGTCGCATGCCACGTGTACCGTC
CATTCAACTAACAGTTAGTACGAACCCCGAAATTTTGTGTTTCTTTTCGACGAAACTGACCAGT
GCAGTGTTCAAATATACCAGGACTGCGTGCAAGTACGGCGGGAAGAACATAGCCTTCCGTGTAA
ACGAGGGCTCGACGAACTTCTGGCTGTCACTGCTGGTCGAGTTCGAGGACGGCCAGGGCGACAT
TGGATCCATGCAGATAAAGCAG
Conservation Information
Conserved circRNAs osa_circ_024648
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021