Detail information of Solyc08g016170.2_circ_g.1


General Information
CircRNA Name Solyc08g016170.2_circ_g.1
ID in PlantcircBase sly_circ_002493
Alias SL3.0ch08:6987289|6991866
Organism Solanum lycopersicum
Position chr8: 6991642-6996219  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc08g016170.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Solyc08g016170.2.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTCATGCAACTTCCACAATAGTTGGTGATCTAGCTGAGGTAAACGCTATTAAGAAGGTATTC
AAGAACACTTCAGAGATCAAAATGAATGCAACCAAGggtgatggaaagtttggagcatgcaatg
aaacgaggagcacccataattgcagagtacttgggtggtgcagtaaattgtgatgctcatcaca
tgactgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCCATAATTGCAGAGTACTTGGGT
GGTGCAGTAAATTGTGATGCTCATCACATGACTGACCCCAGAGCTGATGGACTTGGTGTTTCTT
CATGCATCCTTAGTAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATGTTTGGTTCTCTT
CCTCCACTCATTATTTTTTTTTTGGCTAAATATTGAGCATGCTGCTCATTTTATTTCATACTAA
AATGATTAACAGTCCAGCCAAAGGCAAAAACAAAATAAAGCCAACATAACAAATTCGACCCGTT
TCAACATGGTCCTACCCTTTCTAAAAATGATCCTACACTTATTTGATATTCTACTTTTGTTATT
TCCACTCAATAGTCAAAGAAAAATAGTAACAGGGCTGCAGGAAAGAACAAATTGCTGTAGATTA
AGACAATATATATTAGGTCATAATCTGTTGTCCTTCAGGCACTAAATCAAACATTTGTACTTCC
ATACTCTCCATTTCATGAGGTATTCATCATTATGTAAAGAGTAATGGACATACAAAATGTAGGG
CTGACATCAATAATATGTTTTATCATGAGACATGGATCTTGTTTGAAGCTTTTACCTTCGTATT
GTTTTTTTCTTGTAAATGTAGGACTCAATATTTCAATGATTAGTCTGAAAGGACACTTGTAGCA
TCTGAGTTTGTTCAATATCTCCATCGCAATGTTTAGTGCCTTGTTTGTTAGGTAAGTAAATAAG
GTTATTAGATGGACAATATGGGGAAACCTTTGTGCATAAATAATATACAAAGTGAGCACTCTAA
TGAGAAAATCAGAAATAGGGCCAAATGTAAGGACTGCAAAGTCGTACTAGAGAAGCCCTAAGAA
TATTGGCAGGTGGCCTGTTATGTGAAACTAATAATGGAGCAAAAAAGGGGAAAGATTGCACACA
TCAAAGAAGAACGTACAAACAAAATCTTTCCTCCGTCCATTTTATGTGAAGAAGAGGATGTTCT
GAGTGTGCATCACTGATTACTGATTTCTTCACCCTCAGAGATGCACCTTTTCCTTTCATTAAAT
CTGCATGTGAAATAACATTGCTAACCCGCTTTCTGTTCCTTTTTATTACTGTTATATTTGGGTT
AGCTTGCGCATACCTCCACTAATTCCACCATGTACTTGCTACCTCACAAGTACCAAATAACTCT
GCCTGCCCATCAAGACTTAGGCAGATGTGAAGAAGCACCTATCTATTGCCTCTAAACTCCAGCT
TTTGGAAAAAGAGGCTCACCACCGCCAACATGACCCAGCTTATTACAGTAACATTAGAGTAGTG
AATTCGATAATTTGTTAACAAATTTGCAGTGTACGGGTACATGGTGGCCTACTTCTTCACCAGC
TTCTTGCACAAAAATATACTCTCTCACTCTCCTCTTCTCCTGTTCAGGATTTAATTCCAGAGTA
GATGGCCAGCTTCTTTACAATTTAAAATAATAATCGATATAAGCTCTACTTCTCTTGTTTAGGC
TTGAATTCTGGGAATCAAACTATGCTACTTCCTAGATTTGTTGTCCTAACAGCTGCATGATAAA
GCCATTACTGACCCTTAACAAAGAAAAAAGTTGACAGAAAATGTTTTAGACACATGCTTCCTCC
CATCTTGGCCTCTCTTCCAGTAACCTGCAAATTTGTAGAATATAAAACTGCCAGGAGTTGTTTT
CCCACTCCGCCTCCCCGTGGAATACATCTTGAGTTTGAAAAGGCATGTAAACATATTTCTCTCT
TTTTTCATCAGCTCACTTATAAAAGAAGATACAATTAAGAGAAATCTGATGAATTCAGTCTTGA
GGAATTATCTTTTCATCACCGGTGATCCCAAATAAGGATATTTTCGTGCTACTCCACCATTTAT
CTAACATGCTTAGTAGTTAATAGATACATCTTAAATATTTATAAAATTCCTCCATAAAGCATCT
TAGAAAGACTAGTGATGTTTTATGTCTTCCTGAATGTTGTCCCCCTTATCTCCTCAGATATGTC
CCCCGTCACCTTTCTTAACAAAGCCTTTCTCCTCTACCTTGTTATCTCCACGATCATTTCTCAA
TTAGAGCTTTATTTAAGCTCCTAAACATCCCACACCCTCAAATCATCTACCTTAATAGATTTCT
TTTTTTGATAAAGTAAAGTTGTATTCCTCAGCAATGAGGGTATGCTGGCAACCATCAAAAAGAT
TTACATCAGTGACCCAAAAAAAAAAAACTCAAGAAATTGCTACTAAACTTATAAAGAAGAGAAA
AAGTTTAAAATCTGTCCAGCATCCTCTATACCCTCCTCATTACACCAAAAACAGAAGGTCTTCA
TACAACGCCATTTGATCTGTTGTGCTGATTCTGCAGTATTTTCCATACACCTCTTGTTTCTTTC
TCTCCAAATAGTCCACCATATACAAGAGGGTATCATGTTCCACCATTTCTTCTGGCTCTTACTC
CACCCTCTTCTCACCCAGCAACTGAGAAGGTCTGCAGTGTGTTCTGGCATTGTCCAGTTTGTGA
GTGTCTGCTTAGAAAAATGGTCCATAATTGAGCAGTGACTTTGCAATGGAGGAATAGATGACTA
TTAGTGTCATTTGTCTCATTACGCAGTGAACACCACGAAGCTATTTCAAAGCCTCTTCTTTGCA
GCTTCTCATGAGTTAGGCACGCCCTTCTAGCCACTAGTCATGAGAAACACCTCACTTTAGTTGG
CACTTTATTTTTCCATACCTTACTCCATGATCCAGAGATTTTCCCTGGAAGTTCCTTCACTTTC
CTATTGTACAATCTGCTGACTGACAACATACCATCATGATTGCATTTCAAAATCATTACATCAA
CTTCCAGTTTTGTGCCCTTGAAATCATCCAGTGTTTGTAGCATCTTGGCTACTCTTCCTATTTC
CCAGTCATTTAGTAACCTTCTGAAGCTGAAATTCCATCCTTGTTCAGACCATACCTCATTTACC
ATTGCATCTGGAGACCAGCTGAGGATATATATGTCCTGATAGGAAGACATCAAGGAGTCCTGAC
CAATCCACTGATCTTTCCAGAAAAGAACCCTGGTACCATTCCCCTTTTTGTATCTAATATTGTG
TTGTAGTTGGCCCCATAAATTTCTGATATTTCTCCACACCGAGACACCATACGGGATATTCACC
ATATCAGAAACCCATGGGCTCTTCTGGCCGTACATGTTACTGATAACTTCCTTCCAAAGTTCTT
GATCCTCTCTTCCGAACCTCCACAACCATTTTGCCAACAAGCACTTGTTTTGTAGATGTCATTC
GCTCACCCAAAAAGATGATGAATTTTCTGTCTTTCCTTTAAATCCCACCAAAGTGCTCGATATT
AGTAGTGCTTATTTTCAGCAAATTGCATTAGATGAGAAAACTAAACTAAATCCTAAGAAAATAT
AATATCTTGGTCAAGATGTTTGTAAAAATAAAACTGAAAAAAATCTTAGTCAAGGGACAAGAAA
TGATATTATTATTGAAGGGATGTAAATGGATGTGCAGAAGATACTGTGACTGTTTTGACCAAGT
ACAGGGCGATATAGTTATGGGAAGAATCTCTAAGATATGAAAATTATTCAAAATCAGCATCACA
TAGAAATAGTGTGTCATTGGCAAACCATAAGTGAGCATGAAAATGCAACTCTGGTTGCTTCTTT
AGCTCTCAATTCCCTGACATAGTCTTCTCTTTTCTGCTGCGTGCAACGTTTTGCTCAAAGCTTC
CATAATGAGTATGAAGAGCATCAGCAAAGAGGATGTCCTTGCTAGTTTTTTGCAGAAACTCTTT
AGGATTGTCCTTTTTTCGCAGAAACTCTTCAGGATTGTCCTTGCTAGTTTTTTGCAGAAACTCT
TCAGGATTGTCATTGACATGAAGAAAGAAAAGTATTGTCGGTTGATCCTCTATTTCTTTTAGAA
TCCCATCTTTTTCATGTTGAAGTCAAGAAAGCTTAATTCACACTTCCTTAGTGTTTTCCAGGTT
AAGCTTTCATGAATCAGGGACCACCTGCCTTTTAGTATTCATAGCTATTGCTTGAATGAATAAG
ATTGGAAGTCATATAATTCCTTCAATTATTCCCACATGCTGCTGGTATTGCAATGTTGCCAATA
ATACCTCTTAATGGATTTACTTGATCTCTTTCTATGATACTTGATCATTTACAAGAATTTGTAA
AGAGATGGAGATGAAACAAAATGAATGGAAGTTGGAACAGCAATTTGTTCACTTGGCCATTTTG
ATCTTTGGTTAGTATGCTTTTAAGTTGTCATTTAGAACCTTGTTTATGGTGTACTTCAAACATT
ATGGCGTTGGTCACTATATGTGAGTAATAGAGAATATAATGTTAAAACTGCTCATAAATGTTGG
ACGTTGGTTTGATTAGTCAACTGGTCTCTCCTTTTCATTTATTTTCAGGTTAATTACATAAATG
CTCATGCAACTTCCACAATAGTTGGTGATCTAGCTGAGGTAAACGCTATTAAGAAGGTATTCAA
GAACACTTCAGAGATCAAAATGAATGCAACCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124598154
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020