Detail information of BGIOSGA031342_circ_g.2


General Information
CircRNA Name BGIOSGA031342_circ_g.2
ID in PlantcircBase osi_circ_008746
Alias Chr10:24809642_24810006(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21982367-21982731  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031342
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031342-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGTGGCTTTGAAACAATTAGCTTGTCCATGGAACCAGAAAATTGTGAACTTTGACTGATACA
TAAACCCAAACAGTCAAATAAACGAGCTGCAACAACcctgaaactgccgatagaccaacaagcc
taacaattccagcaagagcaaaataaagcttctgactattcacgtgaacaaaccatggaggtac
atggggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAACTGCCGATAGACCAACAAGCCTAACAATTCCAGCAAGAGCAAAATAAAGCTTCTGAC
TATTCACGTGAACAAACCATGGAGGTACATGGGGTAACTCATAGTCAACTGAACTATGTGTTGT
ATTTGGCAAACCATTATCATGGATAACAGATATTTTGGTGGCTGTTGATGCAGGCATGGCATGC
TGAAAACCATAGTTTTCATCTTTAGGATAGGCACCACTTTTTAACTCAGCAACAGAAAATAGAT
ATCCAACAGACAGTGGCTTTGAAACAATTAGCTTGTCCATGGAACCAGAAAATTGTGAACTTTG
ACTGATACATAAACCCAAACAGTCAAATAAACGAGCTGCAACAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021