Plant Circular RNA Database

Detail information of GLYMA_20G071600_circ_ig.1

			
						 General Information
					
						CircRNA Name
						GLYMA_20G071600_circ_ig.1
					
						ID in PlantcircBase
						gma_circ_009704
					
						Alias
						circRNA3684
					
						Organism
						
							Glycine max						
					
						Position
						
							chr20: 25519379-25523632  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI, CIRCexplorer
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						pod
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	GLYMA_20G071600_circ_ig.1
ID in PlantcircBase	gma_circ_009704
Alias	circRNA3684
Organism	Glycine max
Position	chr20: 25519379-25523632 JBrowse»
Reference genome	v2.0.38
Type	ig-circRNA
Identification method	CIRI, CIRCexplorer
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	NA
Tissues	pod
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTCCCCTTGCAAGAGCCTGATTCTTCATCAAGGACAATCTGCTCTGTCTCAACATCATTACCA
ACCCTCCCCCGATCATTCACACCCCTTTTCAAGTACctgacataactcagcataatgtttatat
atctcactgctttcatcttgatcgcctaggagactacctccataccaaccgttggcctcatttg
ttgaggtc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGACATAACTCAGCATAATGTTTATATATCTCACTGCTTTCATCTTGATCGCCTAGGAGACTA
CCTCCATACCAACCGTTGGCCTCATTTGTTGAGGTCATTGTAAGGTACCTACAAAATCAAGATT
ATAAAAGGAGGATCATCTGTAAACTGAAAAAACTAAAAACATCAAATGAGAATGAAGAATGTGG
GACTACAGTGGCCATATGCCTCCAAACGGACACCACCGGATTCTCAACCGATTAAAAATATTTA
GTGGTAATAAAACAATTTTGTTGTCTGGTAAGTTTTGAATATAGTAGATCCCAGAGTTGCACTT
ACTAAACTTTTAAAGGAAATTCTTTCATGAATCATAATTTAAATCAACTGTAACATGGTTATTG
CTAATTGCAGAAAATTAACTAAGTTTAGAATTATATATAGCCATTTAAAATTTTAACAGCTCTA
GCTCCACTTAACAGATCAGATTCGAATGCACTAAGCTTGGTCAGTTAATCAGCATATCTCTGCT
CTGTCTAAAGCTAACAAATCACAATGCCCTAAGTAAACATACAAATGAGTTAGTGGTGACCTAA
AGTGAAAATGTTTGCCGATAGAAAAATGACCAAATAGGATACTGAACATCAAAGGAAAAAATGG
AACGTGCATCAAAGTCTTGAAAGGATAATGCACTTTTCAGATACATACCTTTGGAAAACATCCT
CTTCATTCATATCATTGCCAGAGGAAAGCCAATTCAAGTCACAAAAGCCATTAGCTTGAGATCC
TTCAACGTCAGATTCACGAGAAGCAACTTTTGCAGCAGAGGAACCCTCTTCATACTTTCTCTGG
CCGAAAAGCCAATTTGGGCTTTTGAGCTGTATCTCACTGGGAATCAACAAACAATCAGTTACTC
AACAAAATTACCTCAAGTTACCTATAGCACAAAATAGCTTTTGCTTTCACACTAGTCAGCCAAA
CTGCCCACATTTTCCCATCCAAAATGAGAATATACATGGTTATCGGTTAGGGTGGAAGGGGTGG
CTGACACAGCAACTAAGTTTAAGCAAGGAATTTACATTGATCTATAAAAGGAGGCTCTAACCTT
ACAGATAAGAGAGATCTTCTACCAATCATGGTACTGAAAGTAACAAACTAATTAATGGTTTGTT
TATATTAGATGTTGTTCAAAGCCAGTGGGAGTTGAGCAAAAGGAATAATAAGCTCCTACAAATG
CTACTGAAAAAGTGTGAAAAGTGCATTGGGAATCAAAGTTTTCCCTGTTTGTTTTAGTGAAAAT
CTTAGCCAAACACACTGCAAGTTGTTCATAATTACAAAATATAATAGGCAAGCGGAAAACAACC
AAACAAAAACTATGTAGTGTAGGGACATAACTAAAAATTTGGTAAAAGTTCAGGGACCTGCAGA
GTAATTAAACCGAAATAAAATTCAGAAGTAAAAAAATTAAACAACAACTCAGAAAAGAGAAATT
ACGCTGCATCAGGTGCTACACCACTGTTTCCAGAAACCCCACCTGGTCTCTGATCAGGCTCACA
ACATAGTCTTACATTTTTTATTTTACTGCAGGTCTTTTCAATTAACTTGTCAAATGATGTCTAC
TTTATGCGAGAGAAGTCATCTCTACAAGCTGGTATAGGCATGAATACCATTCCACCTCTTCCAG
AAGGACTGATATTTGGTTCAGAACTGCAAAATTCAGGAAGAAATTGAAGATTGATAGGGAAGTA
AACAATAAAAATATATGTACATACAAAAAATTAGAAAAACCAATGCCGAATGTAACATATCATA
GTAGCATGTCACCAATTTTAATACCAGCCATTTTTATAAGGAGGACTCACCACTTCTCAGGAAT
TAGATCATCCCCAATCCCAGATTCATGGATATAATAATCTGAATCCAGCTCCCAGAGAGCAGGT
TTCCCTTCATGTGGTTGGAAGTAACCTAAAAACCTGGCAATGGAACAATGTCTTAAATATTTAA
AATTATTTATTATTTATTCAAGACATGATTAATTAAGGGAAAGAGTATTTGAACATTAGAAACC
TAAAAATATAAAATCTTACTAAAGATGAACTATGAATTCCATCTAGGAAAGGAAAAGAAAATTA
TTGAGATAAAATAGGTGGATGGAATAATACTAGTTTATTGCATCTTGTTTTTCACCATCTGTGT
AAGCATTGCTATAGTATCGTTTTATAGATTTTAAAAACTCTCTTGATTGTGTTGTTGCTTTCCA
CTTTCCCTGCCTCTCTGGAAACACCTGTCATTCACCTAAATATATGTTACATATATCACAACAG
CTGCAGAAGAAGATGCAAATAAGCAGATTAGATATTTGTCGGCAGATTAAATAAATTTAGAATC
CCAGAAAATATGTCCTACAGTATTGTGAGCATCAGAGCCACCGTATTGCTGAGCAAGAGCATCT
CCCATACTTTGATACATATCCAGTAGAGCTACAGCAATACTACTATCAGGATCCACTTTTGGAA
CATCAGTCAAACCCATTGCATGGAGCTGGCGTCCTAAAGCTTGAAGACCATATGCATACTGGGC
AACATTTGTACGGTCCAAGCAGTCAATGCAGTTGGTGCGGAGAACTCCACTCTGAAAATGTGGT
GCATCACTACTAAATTATTATCTTTTTTATTCTGATGGTTCATTTCAGTCTCTTTGTCTTGATT
AACCACAGAATTTAGCATTTCATTACTGTTCCCAATCCTCACAAGATCCCCAGAACTAGCTCTA
GCTCTCATCTCTCAGTGAAGTATCCCTCTAAAAATACACAATGAGTTGAAAGTAAAAATAGAAC
TTCCTATCTCTAAATCTTGCACTTTTACAATTATAAAATAGAACTGCAATAATATTAAGTAAAA
AAAAAAATCACCCGGAAATAACACTGGCATCAATGATTTTTTATTAAATCTCTAACATTTTCCA
TTTTTCACTAGAGCCTCTACTGAAATAGCCACAAGTGTTGTTACCTTACCACCATCAAAATAAA
ATAGTCTTTGAATTATATTATGCATTTAAGTTTAAAGTTATGATAACGATATTATGTGTTTATA
AACTCTAAACCATACATCTAATCAACAACATAGACTTAAATGTAGAATTACAATTTATTTTATA
AATCCTTGTGCAATACAAATATAAAACCAGAATCAAGTTACAGTTCTAAATTACATTTTCCCCC
GCAAAATGGAGCCTAGTCTTAAATGCCCTAATAGGAGAGATAACATAGACATTTGACGACTGGT
ATGATGCTATTATTTCTTGGGAAGCATTGATACGAATACCTAGCAGTCCATTATTGTCAGCAAT
CATCATTATTCATTACAGATTAAGTCAAGTTTTCCCTCAATCATCTAAAACTGATCATCCAAAG
CAATCTTCCAGTTCAAAGTCCAAAAATAGATAACACAGGAAATCTTAAGAATTATAAGATCAAA
AAATGAAAAGAAAGGATATGAACTTATTCTATCATTTTATGATTTTAACGGAGACTACTAGTTC
TATATCTCCCTAAATTGTGGAAAGAGCATACATAACAGTGAGTATGTCTCTATAACAGCAGGTG
GTCAAACCTCACAACAAAAGTTATGAGGGGGAAAAGGTCACAGACCCCTCATTTTTCATATCAT
TGCTTTCTTTCAAGTTAAGAGTTATGATTCAACTAAAACTTACATGAAAAAAACAAGAAAAAGG
CTGTTTTGAATGTTAAGTAATAATTTCAATGATGGACATACCTCCCTGTGCTTGTTCTATTGCT
CTTGTTGGCTCTCTTAATGATGTTGGTTTTACCACTGTAGTAAAACCCAGTTAAATCAAGCGCT
TCACTAGCTACACCTCCTAAATCAAGTTAAGAACAATAATTGGATTGCCATATCTCTTAGCTAG
GTCTTCAAAATGCAATTTTGTTGCTTGGTGTGTTGGATCATACCTCTGCACTGGAAGTCAAAAC
AGGGGGGGCGGGGGACATTAAAAGAGAGCTAGATCTATTATAACTTCATAAAATTTAATAATGA
ACAGGATAAATATTAATCTCAACTGTTTTCATACAAATTATGTCAGGCTTGGGGCTAAATGTTG
ATGCTTCTTGTGACCAGAAAAGCGCTATTGATCCACGTATTTGCACAACTGAACTCATCTTCCC
CTTGCAAGAGCCTGATTCTTCATCAAGGACAATCTGCTCTGTCTCAACATCATTACCAACCCTC
CCCCGATCATTCACACCCCTTTTCAAGTAC
						
					

			
		

Sequences
Splice junction sequence	CTTCCCCTTGCAAGAGCCTGATTCTTCATCAAGGACAATCTGCTCTGTCTCAACATCATTACCA ACCCTCCCCCGATCATTCACACCCCTTTTCAAGTACctgacataactcagcataatgtttatat atctcactgctttcatcttgatcgcctaggagactacctccataccaaccgttggcctcatttg ttgaggtc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGACATAACTCAGCATAATGTTTATATATCTCACTGCTTTCATCTTGATCGCCTAGGAGACTA CCTCCATACCAACCGTTGGCCTCATTTGTTGAGGTCATTGTAAGGTACCTACAAAATCAAGATT ATAAAAGGAGGATCATCTGTAAACTGAAAAAACTAAAAACATCAAATGAGAATGAAGAATGTGG GACTACAGTGGCCATATGCCTCCAAACGGACACCACCGGATTCTCAACCGATTAAAAATATTTA GTGGTAATAAAACAATTTTGTTGTCTGGTAAGTTTTGAATATAGTAGATCCCAGAGTTGCACTT ACTAAACTTTTAAAGGAAATTCTTTCATGAATCATAATTTAAATCAACTGTAACATGGTTATTG CTAATTGCAGAAAATTAACTAAGTTTAGAATTATATATAGCCATTTAAAATTTTAACAGCTCTA GCTCCACTTAACAGATCAGATTCGAATGCACTAAGCTTGGTCAGTTAATCAGCATATCTCTGCT CTGTCTAAAGCTAACAAATCACAATGCCCTAAGTAAACATACAAATGAGTTAGTGGTGACCTAA AGTGAAAATGTTTGCCGATAGAAAAATGACCAAATAGGATACTGAACATCAAAGGAAAAAATGG AACGTGCATCAAAGTCTTGAAAGGATAATGCACTTTTCAGATACATACCTTTGGAAAACATCCT CTTCATTCATATCATTGCCAGAGGAAAGCCAATTCAAGTCACAAAAGCCATTAGCTTGAGATCC TTCAACGTCAGATTCACGAGAAGCAACTTTTGCAGCAGAGGAACCCTCTTCATACTTTCTCTGG CCGAAAAGCCAATTTGGGCTTTTGAGCTGTATCTCACTGGGAATCAACAAACAATCAGTTACTC AACAAAATTACCTCAAGTTACCTATAGCACAAAATAGCTTTTGCTTTCACACTAGTCAGCCAAA CTGCCCACATTTTCCCATCCAAAATGAGAATATACATGGTTATCGGTTAGGGTGGAAGGGGTGG CTGACACAGCAACTAAGTTTAAGCAAGGAATTTACATTGATCTATAAAAGGAGGCTCTAACCTT ACAGATAAGAGAGATCTTCTACCAATCATGGTACTGAAAGTAACAAACTAATTAATGGTTTGTT TATATTAGATGTTGTTCAAAGCCAGTGGGAGTTGAGCAAAAGGAATAATAAGCTCCTACAAATG CTACTGAAAAAGTGTGAAAAGTGCATTGGGAATCAAAGTTTTCCCTGTTTGTTTTAGTGAAAAT CTTAGCCAAACACACTGCAAGTTGTTCATAATTACAAAATATAATAGGCAAGCGGAAAACAACC AAACAAAAACTATGTAGTGTAGGGACATAACTAAAAATTTGGTAAAAGTTCAGGGACCTGCAGA GTAATTAAACCGAAATAAAATTCAGAAGTAAAAAAATTAAACAACAACTCAGAAAAGAGAAATT ACGCTGCATCAGGTGCTACACCACTGTTTCCAGAAACCCCACCTGGTCTCTGATCAGGCTCACA ACATAGTCTTACATTTTTTATTTTACTGCAGGTCTTTTCAATTAACTTGTCAAATGATGTCTAC TTTATGCGAGAGAAGTCATCTCTACAAGCTGGTATAGGCATGAATACCATTCCACCTCTTCCAG AAGGACTGATATTTGGTTCAGAACTGCAAAATTCAGGAAGAAATTGAAGATTGATAGGGAAGTA AACAATAAAAATATATGTACATACAAAAAATTAGAAAAACCAATGCCGAATGTAACATATCATA GTAGCATGTCACCAATTTTAATACCAGCCATTTTTATAAGGAGGACTCACCACTTCTCAGGAAT TAGATCATCCCCAATCCCAGATTCATGGATATAATAATCTGAATCCAGCTCCCAGAGAGCAGGT TTCCCTTCATGTGGTTGGAAGTAACCTAAAAACCTGGCAATGGAACAATGTCTTAAATATTTAA AATTATTTATTATTTATTCAAGACATGATTAATTAAGGGAAAGAGTATTTGAACATTAGAAACC TAAAAATATAAAATCTTACTAAAGATGAACTATGAATTCCATCTAGGAAAGGAAAAGAAAATTA TTGAGATAAAATAGGTGGATGGAATAATACTAGTTTATTGCATCTTGTTTTTCACCATCTGTGT AAGCATTGCTATAGTATCGTTTTATAGATTTTAAAAACTCTCTTGATTGTGTTGTTGCTTTCCA CTTTCCCTGCCTCTCTGGAAACACCTGTCATTCACCTAAATATATGTTACATATATCACAACAG CTGCAGAAGAAGATGCAAATAAGCAGATTAGATATTTGTCGGCAGATTAAATAAATTTAGAATC CCAGAAAATATGTCCTACAGTATTGTGAGCATCAGAGCCACCGTATTGCTGAGCAAGAGCATCT CCCATACTTTGATACATATCCAGTAGAGCTACAGCAATACTACTATCAGGATCCACTTTTGGAA CATCAGTCAAACCCATTGCATGGAGCTGGCGTCCTAAAGCTTGAAGACCATATGCATACTGGGC AACATTTGTACGGTCCAAGCAGTCAATGCAGTTGGTGCGGAGAACTCCACTCTGAAAATGTGGT GCATCACTACTAAATTATTATCTTTTTTATTCTGATGGTTCATTTCAGTCTCTTTGTCTTGATT AACCACAGAATTTAGCATTTCATTACTGTTCCCAATCCTCACAAGATCCCCAGAACTAGCTCTA GCTCTCATCTCTCAGTGAAGTATCCCTCTAAAAATACACAATGAGTTGAAAGTAAAAATAGAAC TTCCTATCTCTAAATCTTGCACTTTTACAATTATAAAATAGAACTGCAATAATATTAAGTAAAA AAAAAAATCACCCGGAAATAACACTGGCATCAATGATTTTTTATTAAATCTCTAACATTTTCCA TTTTTCACTAGAGCCTCTACTGAAATAGCCACAAGTGTTGTTACCTTACCACCATCAAAATAAA ATAGTCTTTGAATTATATTATGCATTTAAGTTTAAAGTTATGATAACGATATTATGTGTTTATA AACTCTAAACCATACATCTAATCAACAACATAGACTTAAATGTAGAATTACAATTTATTTTATA AATCCTTGTGCAATACAAATATAAAACCAGAATCAAGTTACAGTTCTAAATTACATTTTCCCCC GCAAAATGGAGCCTAGTCTTAAATGCCCTAATAGGAGAGATAACATAGACATTTGACGACTGGT ATGATGCTATTATTTCTTGGGAAGCATTGATACGAATACCTAGCAGTCCATTATTGTCAGCAAT CATCATTATTCATTACAGATTAAGTCAAGTTTTCCCTCAATCATCTAAAACTGATCATCCAAAG CAATCTTCCAGTTCAAAGTCCAAAAATAGATAACACAGGAAATCTTAAGAATTATAAGATCAAA AAATGAAAAGAAAGGATATGAACTTATTCTATCATTTTATGATTTTAACGGAGACTACTAGTTC TATATCTCCCTAAATTGTGGAAAGAGCATACATAACAGTGAGTATGTCTCTATAACAGCAGGTG GTCAAACCTCACAACAAAAGTTATGAGGGGGAAAAGGTCACAGACCCCTCATTTTTCATATCAT TGCTTTCTTTCAAGTTAAGAGTTATGATTCAACTAAAACTTACATGAAAAAAACAAGAAAAAGG CTGTTTTGAATGTTAAGTAATAATTTCAATGATGGACATACCTCCCTGTGCTTGTTCTATTGCT CTTGTTGGCTCTCTTAATGATGTTGGTTTTACCACTGTAGTAAAACCCAGTTAAATCAAGCGCT TCACTAGCTACACCTCCTAAATCAAGTTAAGAACAATAATTGGATTGCCATATCTCTTAGCTAG GTCTTCAAAATGCAATTTTGTTGCTTGGTGTGTTGGATCATACCTCTGCACTGGAAGTCAAAAC AGGGGGGGCGGGGGACATTAAAAGAGAGCTAGATCTATTATAACTTCATAAAATTTAATAATGA ACAGGATAAATATTAATCTCAACTGTTTTCATACAAATTATGTCAGGCTTGGGGCTAAATGTTG ATGCTTCTTGTGACCAGAAAAGCGCTATTGATCCACGTATTTGCACAACTGAACTCATCTTCCC CTTGCAAGAGCCTGATTCTTCATCAAGGACAATCTGCTCTGTCTCAACATCATTACCAACCCTC CCCCGATCATTCACACCCCTTTTCAAGTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.021987755

Conservation Information
Conserved circRNAs	NA
PMCS	0.021987755

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021a

circRNA

Detail information of GLYMA_20G071600_circ_ig.1

Address

Any questions?

Supported by