Detail information of Os04g0430000_circ_g.1


General Information
CircRNA Name Os04g0430000_circ_g.1
ID in PlantcircBase osa_circ_023843
Alias NA
Organism Oryza sativa
Position chr4: 21325102-21325272  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0430000
Parent gene annotation Similar to Ser Thr specific protein kinase-like protein. (Os04t0
430000-01)
Parent gene strand +
Alternative splicing Os04g0430000_circ_g.2
Support reads 2
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0430000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTTTTGGGCTCAGAGAGGAGTTATGTAACAAC
CAGAGTTATGGGGACATTTGGcttaatgtatctgcatgagggacttgagccaaaggtggttcat
cgtgatgtcaagtcgagcaacatcctccttgacaagacctgga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 171
Transcript exons: 21325102-21325272
CTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGTCAAGTCGAGCAAC
ATCCTCCTTGACAAGACCTGGAATGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTTTTGGGCT
CAGAGAGGAGTTATGTAACAACCAGAGTTATGGGGACATTTGG

Genomic sequence CTTAATGTATCTGCATGAGGGACTTGAGCCAAAGGTGGTTCATCGTGATGTCAAGTCGAGCAAC
ATCCTCCTTGACAAGACCTGGAATGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTTTTGGGCT
CAGAGAGGAGTTATGTAACAACCAGAGTTATGGGGACATTTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.613545712
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017