Detail information of Os10g0563200_circ_g.1


General Information
CircRNA Name Os10g0563200_circ_g.1
ID in PlantcircBase osa_circ_008020
Alias Os_ciR2511
Organism Oryza sativa
Position chr10: 22228041-22229130  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os10g0563200
Parent gene annotation Armadillo-like helical domain containing protein. (Os10t0563200-
01)
Parent gene strand -
Alternative splicing NA
Support reads 8
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0563200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCTGTATATGCTTCAAAGCCATTCTCCTAGCTCCCTCAACATTAACACTCTTGGAACTGCCC
TCTGATGACGTCCCAACCAATGCAACCTCATCCATTcttgggccgcaattttgcgatgttttga
acaggctgagaaggctgctgaagaaatgccttgttggaagattagcataagctccactgctgtg
ctttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 237
Transcript exons: 22228041-22228136,22228990-22229130
CTTGGGCCGCAATTTTGCGATGTTTTGAACAGGCTGAGAAGGCTGCTGAAGAAATGCCTTGTTG
GAAGATTAGCATAAGCTCCACTGCTGTGCTTTGCCGTAGTGAAAACTTGTGGGTCCGAAAATGT
CAGAACAAAAGTCTGTATATGCTTCAAAGCCATTCTCCTAGCTCCCTCAACATTAACACTCTTG
GAACTGCCCTCTGATGACGTCCCAACCAATGCAACCTCATCCATT

Genomic sequence CTTGGGCCGCAATTTTGCGATGTTTTGAACAGGCTGAGAAGGCTGCTGAAGAAATGCCTTGTTG
GAAGATTAGCATAAGCTCCACTGCTGTGCTTTCATGTTGAAGTCCCTGTCTGATGGTGTTCCAA
ATTTCTGAGGACAATTCTTGCAAAGACTTTGGCTTCGATAGAAGCGGTCGTGGCTGCTGCTGCT
GCGCGCAAGACTCGAGCTGCCCCTGCTTTCTGCAGGAGACCCGCATGGTGCACTGCGTGCCGAC
CTCCAGGGATTGTGAACTGCATTATGTTGGGAGTATTCTCATTAGATCTATAAGTATGTTTTGC
TGGATGGTAAAATCATTTTGCATCAAATAGAAGAGCAGATGGAAGTCCTCTTGTGTGAATGTCT
GAGTATTTTGTGTGCGCACGTGTGTTTGAGAGATAAAAACACAAATACATGCAAGCATGATATT
AATCATGAGGTATGGTTCCTCTTCTTAGAACAGATCAATGGTGCTCAACTTTCATAATGTCTTG
TGCATGCGGAATAGCCAAGGAATACGTTGGTTCTCAATAGATAGGGGTCTTCAGAATATTAAGA
TGGTACGGAAGGAAACAAACCTGAAGAAGGGCAAAGGCAGCACAAGCGCGAAGAATTGATGCAG
GATTCCGGAGCATGGCAACAAATCTAGCGATCTCGGCACCACTGAAGGGAAGTAAAGGACTATA
TTAGTACTACATTCCTCTTAGCTACATTGCTACCAAGACAGGTCCAAAATAAGATGAACGGGAC
AAGCATGAATCCGGTTTAAAATGTTCCACATGCTCTGCCTAAAGAATAGCCAGCTAAACTTCAG
GAATAGTAAAACTTTAGTGAAAGAATAAAGCCAAACCTGCATCTCAGGTGTCCAGCTTCTTGTA
TAAACACTGCATCAGCAATCTGAGATAGTGCTGCTGAGGCTGAGGAGGTGGAAGCCGTAGTGAA
AACTTGTGGGTCCGAAAATGTCAGAACAAAAGTCTGTATATGCTTCAAAGCCATTCTCCTAGCT
CCCTCAACATTAACACTCTTGGAACTGCCCTCTGATGACGTCCCAACCAATGCAACCTCATCCA
TT
Conservation Information
Conserved circRNAs osi_circ_002952*
PMCS 0.353694075
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015