Detail information of BGIOSGA032152_circ_ig.2


General Information
CircRNA Name BGIOSGA032152_circ_ig.2
ID in PlantcircBase osi_circ_008860
Alias Chr10:10249999_10254568(MH63RS2), Chr10:10741672_10746238(ZS97RS2), Chr10:10249999_10254568(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 7201732-7206301  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ, CIRI2, CIRCexplorer2, CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032152_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTGAATTGATGCCAGATTCAGAGAAGTTCAAAGGGAACAACTCTCATCCTTAATTGAGATGC
CTACTTCTGAAAGTCTTCAGACTCACCTTTCAGCAGgtcatccaggattattgggggacaggaa
cattcggttgtggaacaattattgtggaggagaaagatttcattgcagagaatgtcacgtttga
caactcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATCCAGGATTATTGGGGGACAGGAACATTCGGTTGTGGAACAATTATTGTGGAGGAGAAAG
ATTTCATTGCAGAGAATGTCACGTTTGACAACTCATCTCCCTAGGTGCTTAATTTTTACTTGTT
CCTTTTTTTTTTACCAAAACTTGTTCGTGTTCCATAGAGAGATGCCTGTGCAAGAGCGCACAAA
GCTCATCTACCAATTGTGGTGCAGGGGTATGGGCAGATAGATGCAGTTTGAGTAACAACAGGTA
GAAGTGCATTCTACAATTGCAGGTTCCTTGATTGGCAGGTATGCTCATTTATTCAACTCTTGGT
TAAATCATTTCATTAGTTAAGATAATCATGGTTTAAAAGCGTCGCCTAGGCGACGCCTAGGCGT
CTGAGCACCATCAGGGGGCAGAGCGTCCCCACCGCTTACCCTTCTACACGTCTTGGATCCTAAT
ATCTCGTGAAATCAGGTAGATACAGGCAAGGTGGGGAGGGGGGTCAAGGGCGCATGCGCTGTAG
GGAACGCATGCTGGGAAGGAAATCGCATGAGGATAGGATGGAAATCGCATGTGCGACGATTTAG
GGAGAGGAAAGGGTGAAAGATGGAAAGAGAATAGAGAATAGGGGTGTGCCAATTTAGGGAGAGG
GAAGGGTGAAAGATGGAAAGAGAGTAGAGAATAGGACGGGCAGAGATTGGAAACATGGGAAAGA
TGGAAAGAGAATAGGGGGAAAGATGGAAAGAGAAGAAGGGGGGAAGATGGGAGACAACCAAGAT
CCATTAGACTGATGAGGTCCTTGCAGCGGTTACATGTGAACATGGTTGTACCAGTCTTATATAA
TTTCTGCAAGATTGAGAACCTTTAGTTATAAACATTGATGGGATGGCACCATTAATAGTAACAG
CTACATTTTCTAGCCCAAAAGTCCCATCAGCCAAAAATGTAGATGTCCTCCAGTATATTCATGT
GTGTTATTGGTCTGTAACATTATTTTGTGTGCTAAAAAGAGTTACTGGTAAATCTGTTTGATTT
TATGATTTATAAAATGCTCTTACACACTGGTTGATAATATAAGTATGCCTATCTATTGTAGTTG
TATTGTGCATGGATTCAGATTTTTATTAGCTTTTAATTCTATCAGTTGCTGCAGAGTGTCCGAA
ATTTTAAAAACCTAAACCTTGTTTCAGGTACAACACCTGGGATTGGTTTGAGATCATGTGATTG
ATCTCATCAGCTCTGTACATACATTTCTTTCAATAGTGCAAATATTAACCACAACCATTCTTGA
ATTTTAATCACAAGCTCCAGTCTATTTTTCTCTTAAACAACAGGTTATTTTACACCTGAGTCTA
GATGTCTATGATAAGAAGGTATTCCATGTTCTGATGGACTAATAATGTCTATTTCTTGCCACTT
ATTTTCAGGGAAGTATATAGCTGTTGGAAAAGATCACTGTTCTTTTATAGCTCATAAGCATTTT
CTCGTTTGCTTTTATGCAGCTTAGGAGAAATAGAAGGCACCATGTCTCTGATATTTACCTTTTA
CTGGGCTCTAAGGATGATAAAATCCTGGAATGAGAGACATGGTATGATTTAGCTCTCTTGTACT
TATGCACCTATGCATAGGTTCGTGTATCCAACATAAGAGCCATACGTCCATATTCTGCTTTGGA
CTGGCTGGCATGGTATATATGACTATTGTTTATTTCTTATGAAGAGTGTGACATTTTTTATGGG
TGCTATGAAGATCAAATTTTTAACTGTTTCTTACACCATTAAATTTCTACAAAAAAAACATATT
CTATTTGTAGGAAAACTATATGTAGCGAAAGGTAAGTCTGAAGAAGCTTTTACATAAACATGTT
TCGAGTTTGATATGAAGTGCTATTGTTCTTCAAGAATTTGACAACATGTCATTGCCTTCGATAC
GGTGCTTGAATTATGCGTTCGATAGGACAGTTTATGTGGACCGTTTAATCTTGGGGTGCTCTAC
AAAGAGGTAGGTGATCAATGAGCAGCAGAAGTTGCTGAATGTTTCCAGGCTGCTAGATTTATTG
AAAAAATAACACCTGTAGAATCTTTCTGCTGATATTTGTATCTATTGGTGCTATATAAAGTTAG
AAACCAACAGCTATTGTTGTTTGTCTGTTAAAATGTTTCAGTCATAGTGATGAAAATACTGCAA
AACTCCATTCATGACCTACTTTAGGATGATATTAACACTATAATAACATTTATTACCAAAACAA
TATAAATCTCTCTTTCTTTGATTAGTGAATCTTAAATATATCTTATTCTATGCTTAATAACTGA
AACAATATCAACTTTTGTGACTGAAAACAGTATCAACTTTCGGCTATTTGAATTACTAAATATC
GCCGTTGCATTAGCACATGCATATTACTTGTGTTGTTTGTTTTTGCACAGTTCCGATGCCAGTC
CTTTGGACTTGTCAGTGCACAGGAAGAGTGAGATTTGTCCTTCCGCTCACCTTTGAAGTAGAAG
GTTCCATTTGTTTTTTCTTTTGTATGTGTTGTTTCAGTTTATCAAAGGGTTGTAAAATTCATAT
GTATAGGGCACTGTAAGAACTAAATTTAATCAGAGCATAAGAAACTGATATAAAAAACAAGTTT
TTTGGTTGCGTCCAAAAAGTTTCTAATGAAATTTAGTAAAGGCACATGAACAATCATGATTAAG
TTCAAAAGGAATTGAAGTATTCAATAGATTGAAACGAGTACCTTAGTTGTCGTTTGCATACAAC
GCATGTATTCACGAAGGCATCCGATACACCACGTTCTGAACAAACTTGGGCAAGAGAGCTATCC
ACACCAAGGTAAATAAGATATTATTGGTATTTCACAACTGAACCTGTTACCTAATGTGACCAGT
TGATTTAGTGCTTTTGCAACATGTAAGAGAACAAACAAATGAGTGATATTCAGGAATCAAGGAA
AACAAAAAGTTGTCAATGCACAGAGTTTTTGTAATTCATCTTGTAGAAATTAAATATAGAAGAT
TAGAAGGATGGCTTTTGAAATCATAGCAAAGCATTGCCACGCCATGATCAATGTCATGGTAGTA
TTTTGTTGTCTTGCCATGTCTGTTGGCGCAGCCAAACTCTTCCCACATTATGGTATTAACACGG
TGGGCTTATAGTTAGTAGAATCATCTCTTTCTAGTTCTTTTGAGGTTTAAGTAGTGCTTTGGAC
CTTTATGCTCTCATTGCTGGCCATGTATATTCAGTATTTTTTTACTTGCTGGTTCCAAAGTATG
GAAATGTTCACGAGTTTTTAGAACTATATCTCCACAGTGGGACACTTAAGGATAGGAATTTACT
TGATAAACTTTTAGTGATATTAGTAGATAATGGGAATTTACTTGATACACAACTGTGCAAATAC
ACAATACTTTATTATTTAACCTATACTTTCATCATATGGATCTGCACATATATATAATGATTAA
ATACTGTATCTTGATCATATGATGGCTTACACACATGATATTATGGTATTATTTGCTGCAAGTA
TAGTGCTATGAAATAAATCATCTTTGAGACTTCTAAGTAGTATTGGACCTCCTAATTTCGTTAT
AAATAATTTCAGTATTATTTATAGATAATGATCACCCAACTTAATTGTTTTTGGATAGGAGCAA
CAATCAAGTCAGATCTTTTTTCATTTTTTCAACCAGCTATTTTGAATCCAAAAACAGACTAAGT
CGATTTTATGTGGCTAGATGATAAGGTTAATATCTGTAGCTAATCTGGTTGTTTCTTTTGTAGG
TTTTGGAGGGTTTTGCGTCTGGGGGATCCTTGCAAGTAGCTCACAATATTAAACCTAGATTAGA
TTTAACATCTACAGAGTGAACAATCTATGCTTATCAAGTCTTTGGTAAGCTCAAGTGCTGAACT
CGTTCCATCTGTTTACCTCTAGTTAAGGTGCTTGTTTGTTTTGCAATAACACTTGTATATATAC
TGCGTGAAAAGAGTCAAAACTTTATTTTCATTACTTCAGTGACACATCTGATCCCTGCTTTCTA
TTTCTTTAATTTCTTCGCTAGATGTCTAGTATTTGCAAAATGACCATGTGATTAGATTGACTGG
TCCTCTTTCTTATCGCTGCTCCTTTTTTCATTCCTCCTATTAACTTCTGCCTTAATATGGTCTC
TTATTATAGGAGAGACAATTACACCATCAGGATTTAAGACTATTTCATCTGCTCTATCATTGCC
ACATGCTACCCACTTCATTCGCCACAGTACTGAAATTGGTTTATGTATTTTTTTTGCACATTTT
TTTTCAATATTTATTGGATACACTAAAGTTAATTTTTCAGATTGTTAAGTAGATGAACCACTAT
ATTCAGGGGGTTGAGTAGACATTTATATATAATTTTGCTGTTGTTGAACTTATCTATATTTATA
CTATGTCAATGAAATAGAACACTGACTCAGGAATTAATCTGACATGGGCCAAGGTATTGAATTG
ATGCCAGATTCAGAGAAGTTCAAAGGGAACAACTCTCATCCTTAATTGAGATGCCTACTTCTGA
AAGTCTTCAGACTCACCTTTCAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021