Detail information of BGIOSGA000587_circ_g.3


General Information
CircRNA Name BGIOSGA000587_circ_g.3
ID in PlantcircBase osi_circ_010875
Alias Chr01:36288646_36292995(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 38404424-38408774  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA000587
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA000587_circ_g.1 BGIOSGA000587_circ_g.2 BGIOSGA000587_circ_g.4 BGIOSGA000587_circ_g.5 BGIOSGA000587_circ_g.6 BGIOSGA000587_circ_g.7 BGIOSGA000587_circ_g.8 BGIOSGA000587_circ_g.9 BGIOSGA000587_circ_g.10 BGIOSGA000587_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA000587-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAATCAATTGCCCATGGAGGTGATTTCCTAATTGACACCCAATCTGACTTTGTTAGCTCCAT
TGGCTTATATTGTGTTCCAACTAACCATTCAAATTGcccaagtaaaccagcgtttccaggcttt
aactggataccagtagcttcggctgcgctgttgtctcccatagtaagctacaataagtgtaagt
atgaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAAGTAAACCAGCGTTTCCAGGCTTTAACTGGATACCAGTAGCTTCGGCTGCGCTGTTGTCT
CCCATAGTAAGCTACAATAAGTGTAAGTATGAAGCTATGTCAATAAATTGAAGCAACAAGTGTA
CAGTGCCAAAGCCATGAAAAATATATGAACACAGATTGGAGTAATTAGACTAGTGTTGCAAAAA
GGATGTGGGGTATAGCTCTATGTGCCAGAGGAGGTATTTTTTCAGACTTTTGACATTGTTCTAA
CAGCCAAAACCATTGGAAGTCGTCTGGCATTTCTAAACTAGTGGAGAAATGACAACCGGATAAA
AGTAATGGCATATCTAAAACCTATGATACAATTAGTAGCAAAAGAAAATGAAAAACAAAAGATA
TTTTACAGTGACAGTAAGTTATCTACCAACATATTATGGTCATAACACACATGCATTGTGTTAG
CATGCCATCTAGAGCAAACCAGTAGTGTAACAAACGGTCCAGAATAGTGGATATATTATAAGCA
AATAAACTGTATGACTAAATGTGCATACCTTTTCATGATGTTGTTTTGCTATTTGCAAGAATTG
ATCAGTAGCCTGGAAAGCCTTGGTCCTCACATCACTACAAAACCATTGGATGCCTTAGTTGAAA
GACCAAAATAAGATGCATCGTACAGTTATAACTTAAAGAAAGTAGTATTGTCAATGCAAAAATC
TCCCATGTTAGTTTTAACTGTCTTGTCTGTTAAGCTTCATATTTCAATCCATATCAACTTTTAT
AATATATCCATACAGGACATTTTTTCGATCAATTGTGCATGGGTACATCTAATGCACAAAGATG
TCTTAGTTCCGGAAACCATATGCTAATGAATCGTGCAATGACAGTTAGGCCAGAAAGTTAATAA
GCAAAGCTTGCTTCTAAGAAAAAAAGTCAAATCAGACTGATAGCTACTAGCATATGCAAAACAT
TGAGCAATGGTGCTATGATTCATGTTGGAAAGGGTACCAACCATTTGAATTTTACTTGGATATA
ACTACTAGTGGTTAGTGAGACAATAATCTATTCTATCAAACTAACAGATCTCTGAGCCTTTAAT
TGCTTGTTACAACAAGCAACAATGAGAAAGTAGAGACTGAGAGCTAAATGCTGTATGTTATACC
TATCTGGATCAAATGTGAGGACAACAACGTTAGGCAGAATACGAGTTGCAATCTCTGTCATTTC
ATAGTATGAACTAGTGACACTTAGCGCCATGATGCCTGCCAGACAAATGGTAAAGCAATACTTA
CTTGTCAATAATTAGTACGATATAGCATTGTAAGTAGTAAAACAGAACAACTCTACAGGGCAAT
GTACCAGCTGCTCGAGCAGGGGGGAAGGTATCACGTAATGCACGGACAGTAAATGCGTTGATCA
ATACCCTTTTCCTAGTCTGTCAAAATAGCCAAACATTGTTAGGAATGACTATTTACTTATTTAG
TACAAACAGAAAATGAACTCGATATCTAGGCAAGGGAATGGAGAACTCCAGGATATATTTGTGT
TGCTTTCTTCGGGTCAAAACTCAAAAACATATTTTCTAGTAATTTTCAGGTGATTATTATTTCC
TCTTGTCTTTCTTTCTTTACTATCATACATTTATGCATTTCCTTGGCCTTATACTAGCCAGGAT
CACTATGATCAGTAATCTCCAGTAACCAGCCAGTTTTTAACAAAGTTTATCACAGACCATGGAG
ATAAATGGTACAAAAAACATGTGGATTTTAAATAATTGAGAAACTTGCTGGTCAGAAATCCAGA
TATACTGGCTACCTATCTTAAAGTCAGCTTGCTTCAGTGAAATTTCAAGGAAAATTAGTAAGAA
AGCAATAAAAAGGACATACCCCATCATTCATGTAGTTTGCAATATTTCCAAGAAGAATTGTAGT
GTTTGTCCTGATCGCAGGTTCTTCATCAACCTGAACACAGATAACAATGATTTTTTTTTACTTT
TAACTAAATTGTATACCTTCACATGTCAAACTGAGTCCATCTGAGGCATTTCAGTTAGAACAGA
ACATCACCTGGAGCTTAGATAGATACTTCAAGAGAGATCCTGAAATCGTACGCTGAGATAACTA
CAGTAACAGATTGGTGAATTAGTCATAAAGAAGCAATAATCTTCCTGAAAAAATAATACCACGG
AAATTTGCAATCCCAGGATTTTTTTTTCTTTAAAAGCCCGCTGTGCACACAACCAGAGAGAGCG
ATAGATAAATTTAGAACACTTTTTAAAAAGAAAACTGTTAACACAGCACAATCAGTAAAAATGA
AAGACATCCACAAGGATTTTGTTCGGGGTGCAAATGTTGATCATGCAGAGGGTTGGGAGGGTCT
TACTTTGGGTGCCAATACAAGCATAGACTTCAAGGTCAGTTCACGAAGAAAAGCAGAAGTATCA
GAGAACCCAGTGGCAACATGGGGGAAAACCTGCATTAGAGATATTTATCCTGTCAAGCATCAAC
ATTCCAGAAACACATGCAGATGTCCATACAGGAAATGATAGCATACTTGCTCATCAACAGTTTG
AGCTGTCAATGACTCCCCAAACTGATCTATGTGCTGCAAAAGGCTAACTCGGATAGCTCGGTCA
TTAGAGGCAAAAAGCTTCACAATTGTAGGCAAAACCTGAAAATGCCAGTGGTTTTAACTTGTGT
TATAACATCGTAACACACATTTACTGGAATGACGAACGAATATTGGGTGAAAACGAAAGAAATG
AAGTCAAACCTTTGCACTAAATTGGTCAGCTGGAAGCCAGGAACCCATCTTCAACAATACAACC
AAGGCTGGTGCAGCAGCTGAACCAAACTCAAGAGCAGATGCCAGCACAGGGAGCAACTATTGAC
AGAGTAACCAACCGATAAGCATATAAACAAGAACCGGGGGAATAATGGGTTCTATTCATGACTT
GAACATTACCTTTTTCAGGACTATCTCACGAGGAAGCTGCTCAGCTATGTTCGGTAGTTTACGG
AAAAAGCTATCTTTCTCAACACTGTCCTTTAAGTTAAGAACTTCCATGAACTGTATGGTCTCTA
CTAACTTGTTCTGGAAAAACTCTGAAAATGAAGAACCACAATTGTCACTGCAGCTTATTTAAAG
TAATCCAAATAATTGACATAGAATTACAGCATTAAGAGCAAAAGTAGAAGGTTATGGGCGTCGA
TGTAATAAGTGTCGAAATACAAAAAGTAATTCCTGAAATGATGAGAGAAAAATATGTTGAACTT
ACCACTGTTGTCAATAAGTTTAGAAGGGTTCATTCTACGAGAAGGGGCAGAACTCAAGAGCCTC
TGGTAATCTGGAAGTAAAGACTGCAGCAAAATAGAAGGAAACCAACAACTTTATGATACGCATG
AACAATGTATAGATTAGTCAGCATAATGCTCTACATTACAGACTTCAAACAGTGGAGAAGCAAT
ACAAAAATTACCAACAAAAAAAATCAATAGCTAAATAGAGACAGATTCAGGACCACGATCGTGC
AAACTAACCTTTGGGATTGAAGCAGTGTTCCGAAGGTCCTCTGTCCTGGTTAGCTTTGCACCAG
AAAAGAGCTCATAAATTAAACACCCTGCAATGAGTCCAGAGATCAATATTTTTGGAGATGAGTC
TAAAAACCATTTTTACTGTTAAATACTGCTATAAGAAACTTTCAGGTGCTCCTTGAATGTGATT
ATGTGAAAGAGATTCAGCTTAGTAACATATGACTATTCTCTGTGTGTTTTGCCTTTAGATTGTC
TTACATTCCCTTTTTTTTTCTTGTTGATTACAAACAATGGATTCTCTAATTCGAAAAATATATC
CTCCGCTGGGTGACATTTATTATAAATATTTCATCATTCTGGAAATAATATTAAAGAGAGTCTA
TATGCAGCAAAGCAAACAAAAGCAAAATGCAAATAACAAAGGAATTCAGGTAACCATAGTTTAT
TAATTTGACTCTAGACATGTCTTTTCTTGGTCGATCTTGACCTGGTCTATAGTGCAAAACTTTA
TAGTATTTACCATAAAAGATTTGAAACTACGATACAGGCCCATAGAGAGATATCCATTTAAAGA
AAATAAACAACTTTTGCAATTAAAGTACAATAATGCCGAGTGCACATCCGACAAGGAACTGTTG
AACAGTTTCCGAATTGTAAAATTATGGAAACAGAACAATCAAACAAGAATGTAATGAAGGAAAA
GGAGTTAGCTCTGCTTACCCAGTCCCCAGGAATCAATTGCCCATGGAGGTGATTTCCTAATTGA
CACCCAATCTGACTTTGTTAGCTCCATTGGCTTATATTGTGTTCCAACTAACCATTCAAATTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021