Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G14170_circ_g.2 |
ID in PlantcircBase | ath_circ_002469 |
Alias | AT1G14170_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 4843875-4844129 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI2 |
Parent gene | AT1G14170 |
Parent gene annotation |
F7A19.25 protein |
Parent gene strand | - |
Alternative splicing | AT1G14170_circ_g.1 |
Support reads | 1 |
Tissues | root, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14170.1:1 AT1G14170.3:1 AT1G14170.2:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.517589536 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
4843962-4843877(-) |
Potential amino acid sequence |
MRSVTRANIRILQKEDVPKIAREDEEMVQFYEDQSPAVNAAIRLQQRCSEKVGKDANDLAISTR LLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQFYEDQSPAVNAAIR LQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAR EDEEMVQFYEDQSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEM RSVTRANIRILQKEDVPKIAREDEEMVQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Chu et al., 2017;Zhang et al., 2019 |