Detail information of BGIOSGA000597_circ_g.3


General Information
CircRNA Name BGIOSGA000597_circ_g.3
ID in PlantcircBase osi_circ_010861
Alias Chr01:35975260_35975992(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 38185773-38186500  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA000597
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTACTGTCACAATGGCAAAGATATACAGAATTCAAGCATGGCCATGCGTATCAAGAGGGACT
TTGTTTGAAAGAAAGGATTGAACTCGAGCAAATTACgtgagtttgcacctatcttccccagata
atgggcaatggaaacaaaatatcaaagagtaaatttcacaaactacagatactttgaccacaat
atcgaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGTTTGCACCTATCTTCCCCAGATAATGGGCAATGGAAACAAAATATCAAAGAGTAAATTT
CACAAACTACAGATACTTTGACCACAATATCGAAAAACTACAGATTTAACATGATGTATCACAA
AACTACAGATTTAACACTAATTTTATCACAAAACTACAGATTTAAGGTAAAATATCGCAAAACT
ACAGATTTAGTAATACAGTTAACACAAACATACAGGTTTAATGTCAATTTAATCACCAAACTTA
GATATTTATAACTCAAACATAACATTAGGGCAAAGGATTTAAATCCTAAAATATGTAGTTTTGT
GATAATTTTATTCTAAAATATGTAGTTTTGTGATACTTCGTCTTAAACCTGTAGTTTTGTGATA
AAATTGTTACTAAATCTGTAGTTCTATGATATACGACCTTAAATCTGTAGTTTTGCGATAATTT
GGTCAAGTATCGTAGTTTTGTGAAATTTACTCTATCAAATAACAACAATTGGGCATCAGTAAGA
CATACTGGAAATATCTTCAGCAAAATTACCATAGTTTAGTTTAATTATGGTAAAATAAAAAAGT
GTGGACGATATGCATGCAGCCTGGACATTACAGTATTACAAGTTCTACAGAAAGTTACTGTCAC
AATGGCAAAGATATACAGAATTCAAGCATGGCCATGCGTATCAAGAGGGACTTTGTTTGAAAGA
AAGGATTGAACTCGAGCAAATTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021