Plant Circular RNA Database

Detail information of Os05g0161400_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os05g0161400_circ_g.3
					
						ID in PlantcircBase
						osa_circ_026738
					
						Alias
						Os05circ03811/Os_ciR190, 
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 3617187-3617467  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long
					
						Parent gene
						
							Os05g0161400						
					
						Parent gene annotation
						
							Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os05t0161400-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0161400_circ_g.1 Os05g0161400_circ_g.2 Os05g0161400_circ_g.4 Os05g0161400_circ_g.5 Os05g0161400_circ_g.6 						
					
						Support reads
						7/291/9/16
					
						Tissues
						leaf/root/root/shoot, root, seed, root, leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0161400-01:2

General Information
CircRNA Name	Os05g0161400_circ_g.3
ID in PlantcircBase	osa_circ_026738
Alias	Os05circ03811/Os_ciR190,
Organism	Oryza sativa
Position	chr5: 3617187-3617467 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ, CIRI-long
Parent gene	Os05g0161400
Parent gene annotation	Peptidase, trypsin-like serine and cysteine domain containing pr otein. (Os05t0161400-01)
Parent gene strand	+
Alternative splicing	Os05g0161400_circ_g.1 Os05g0161400_circ_g.2 Os05g0161400_circ_g.4 Os05g0161400_circ_g.5 Os05g0161400_circ_g.6
Support reads	7/291/9/16
Tissues	leaf/root/root/shoot, root, seed, root, leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0161400-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: CTGCTGTGAGGCTAGGCATT
 R: CCATATTAAGCACTGGACGAGC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							Yes							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							F: AGAAGTTTCCCATCAAGAGG
 R: GCTCAAAAGCTCTTAACTCC
PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: CTGCTGTGAGGCTAGGCATT R: CCATATTAAGCACTGGACGAGC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	Yes Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	F: AGAAGTTTCCCATCAAGAGG R: GCTCAAAAGCTCTTAACTCC PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTT
TCCTACAATGGATTGCACGATTTCACTCTACACAAGtcgtattgctcgtccagtgcttaatatg
gagttaagagcttttgagctaatagaagtttcccatcaagaggagatagaacttgatcacaata
ttaatgat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 132
Transcript exons: 3617187-3617224,3617374-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGGGTTTATGATGATTCTACTGCTGTGA
GGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACA
CAAG
Transcript length: 136
Transcript exons: 3617187-3617270,3617416-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTC
TACACAAG
Transcript length: 153
Transcript exons: 3617187-3617276,3617405-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGG
ATTGCACGATTTCACTCTACACAAG
Transcript length: 155
Transcript exons: 3617187-3617302,3617429-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGCTTTCCTACAAT
GGATTGCACGATTTCACTCTACACAAG
Transcript length: 156
Transcript exons: 3617187-3617248,3617374-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCGG
TTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAA
TGGATTGCACGATTTCACTCTACACAAG
Transcript length: 158
Transcript exons: 3617187-3617277,3617401-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTAC
AATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 161
Transcript exons: 3617187-3617271,3617392-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCC
TACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 169
Transcript exons: 3617187-3617276,3617389-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAA
TTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 171
Transcript exons: 3617187-3617284,3617395-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGTGTGAGGCTAGGCATTTCTCAGGGAGACAT
AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 172
Transcript exons: 3617187-3617276,3617386-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACA
TAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 173
Transcript exons: 3617187-3617266,3617375-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGAC
ATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 173
Transcript exons: 3617187-3617271,3617380-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATTGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGAC
ATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 174
Transcript exons: 3617187-3617283,3617391-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATCTGCTGTGAGGCTAGGCATTTCTCAGGGAGA
CATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 176
Transcript exons: 3617187-3617291,3617397-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTTGAGGCTAGGCATTTCTCAGGGA
GACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 177
Transcript exons: 3617187-3617279,3617384-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGG
AGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 180
Transcript exons: 3617187-3617272,3617374-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCA
GGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 182
Transcript exons: 3617187-3617277,3617377-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCT
CAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 183
Transcript exons: 3617187-3617276,3617375-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAAGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTC
TCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 196
Transcript exons: 3617187-3617288,3617374-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGGGTTTATGATGATTCTACTGCTGTGA
GGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACA
CAAG
Transcript length: 206
Transcript exons: 3617187-3617300,3617376-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTTTATGATGATTCT
ACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATT
TCACTCTACACAAG
Transcript length: 211
Transcript exons: 3617187-3617304,3617375-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATG
ATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCA
CGATTTCACTCTACACAAG
Transcript length: 211
Transcript exons: 3617187-3617306,3617377-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATG
ATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCA
CGATTTCACTCTACACAAG
Transcript length: 212
Transcript exons: 3617187-3617342,3617412-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT
AAATCAATAGTCATATGCTTTATTATACCTCAGGGAGACATAATTCTTTCCTACAATGGATTGC
ACGATTTCACTCTACACAAG
Transcript length: 219
Transcript exons: 3617187-3617307,3617370-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATTTAGGT
TTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAAT
GGATTGCACGATTTCACTCTACACAAG
Transcript length: 235
Transcript exons: 3617187-3617268,3617315-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTAAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTAC
TTTGATGTATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACAT
AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 235
Transcript exons: 3617187-3617269,3617316-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTAC
TTTGATGTATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACAT
AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Transcript length: 255
Transcript exons: 3617187-3617385,3617412-3617467
TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT
AAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTACTTTGATGTATTTAGGTTT
ATGATGACTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
						
					

						Genomic sequence
						
							TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT
CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT
AAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTACTTTGATGTATTTAGGTTT
ATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGG
ATTGCACGATTTCACTCTACACAAG
						
					

			
		

Sequences
Splice junction sequence	TATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTT TCCTACAATGGATTGCACGATTTCACTCTACACAAGtcgtattgctcgtccagtgcttaatatg gagttaagagcttttgagctaatagaagtttcccatcaagaggagatagaacttgatcacaata ttaatgat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 132 Transcript exons: 3617187-3617224,3617374-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGGGTTTATGATGATTCTACTGCTGTGA GGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACA CAAG Transcript length: 136 Transcript exons: 3617187-3617270,3617416-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTC TACACAAG Transcript length: 153 Transcript exons: 3617187-3617276,3617405-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGG ATTGCACGATTTCACTCTACACAAG Transcript length: 155 Transcript exons: 3617187-3617302,3617429-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGCTTTCCTACAAT GGATTGCACGATTTCACTCTACACAAG Transcript length: 156 Transcript exons: 3617187-3617248,3617374-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCGG TTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAA TGGATTGCACGATTTCACTCTACACAAG Transcript length: 158 Transcript exons: 3617187-3617277,3617401-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTAC AATGGATTGCACGATTTCACTCTACACAAG Transcript length: 161 Transcript exons: 3617187-3617271,3617392-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCC TACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 169 Transcript exons: 3617187-3617276,3617389-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAA TTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 171 Transcript exons: 3617187-3617284,3617395-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGTGTGAGGCTAGGCATTTCTCAGGGAGACAT AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 172 Transcript exons: 3617187-3617276,3617386-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACA TAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 173 Transcript exons: 3617187-3617266,3617375-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGAC ATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 173 Transcript exons: 3617187-3617271,3617380-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATTGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGAC ATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 174 Transcript exons: 3617187-3617283,3617391-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATCTGCTGTGAGGCTAGGCATTTCTCAGGGAGA CATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 176 Transcript exons: 3617187-3617291,3617397-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTTGAGGCTAGGCATTTCTCAGGGA GACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 177 Transcript exons: 3617187-3617279,3617384-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGG AGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 180 Transcript exons: 3617187-3617272,3617374-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCA GGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 182 Transcript exons: 3617187-3617277,3617377-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCT CAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 183 Transcript exons: 3617187-3617276,3617375-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAAGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTC TCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 196 Transcript exons: 3617187-3617288,3617374-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGGGTTTATGATGATTCTACTGCTGTGA GGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACA CAAG Transcript length: 206 Transcript exons: 3617187-3617300,3617376-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTTTATGATGATTCT ACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATT TCACTCTACACAAG Transcript length: 211 Transcript exons: 3617187-3617304,3617375-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATG ATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCA CGATTTCACTCTACACAAG Transcript length: 211 Transcript exons: 3617187-3617306,3617377-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATG ATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCA CGATTTCACTCTACACAAG Transcript length: 212 Transcript exons: 3617187-3617342,3617412-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT AAATCAATAGTCATATGCTTTATTATACCTCAGGGAGACATAATTCTTTCCTACAATGGATTGC ACGATTTCACTCTACACAAG Transcript length: 219 Transcript exons: 3617187-3617307,3617370-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATTTAGGT TTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAAT GGATTGCACGATTTCACTCTACACAAG Transcript length: 235 Transcript exons: 3617187-3617268,3617315-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTAAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTAC TTTGATGTATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACAT AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 235 Transcript exons: 3617187-3617269,3617316-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTAC TTTGATGTATTTAGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACAT AATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG Transcript length: 255 Transcript exons: 3617187-3617385,3617412-3617467 TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT AAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTACTTTGATGTATTTAGGTTT ATGATGACTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAG
Genomic sequence	TCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCAT CAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTATATCAAT AAATCAATAGTCATATGCTTTATTATACGCAGAACATTTTAATTACTTTGATGTATTTAGGTTT ATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGG ATTGCACGATTTCACTCTACACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_015939 						
					
						PMCS
						0.572182147

Conservation Information
Conserved circRNAs	osi_circ_015939
PMCS	0.572182147

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3617213-3617207(+)
3617440-3617207(+)
						
						Potential amino acid sequence
						
							MELRAFELIEVSHQEEIELDHNINDGFIVAVVYDDSTAVRLGISQGDIILSYNGLHDFTLHKSY
CSSSA*(+)
MDCTISLYTSRIARPVLNMELRAFELIEVSHQEEIELDHNINDGFIVAVVYDDSTAVRLGISQG
DIILSYNGLHDFTLHKSYCSSSA*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to Pi-starvation

Functional Information
Coding potential	Y
Potential coding position	3617213-3617207(+) 3617440-3617207(+)
Potential amino acid sequence	MELRAFELIEVSHQEEIELDHNINDGFIVAVVYDDSTAVRLGISQGDIILSYNGLHDFTLHKSY CSSSA(+) MDCTISLYTSRIARPVLNMELRAFELIEVSHQEEIELDHNINDGFIVAVVYDDSTAVRLGISQG DIILSYNGLHDFTLHKSYCSSSA(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to Pi-starvation

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Ye et al., 2016;Chu et al., 2017; this study

circRNA

Detail information of Os05g0161400_circ_g.3

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