Detail information of AT2G03667_circ_g.1


General Information
CircRNA Name AT2G03667_circ_g.1
ID in PlantcircBase ath_circ_012696
Alias 2:1116142-1116518
Organism Arabidpsis thaliana
Position chr2: 1116142-1116518  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03667
Parent gene annotation Asparagine synthase family protein
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03667.2:2
AT2G03667.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAGTATAAGTCCGATGCTAGAATCCTGCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCCGG
TTACGGTAGGCACAGAACTAAATATCGAAATGGAAGgtggaaacttgttgagattgatgctgat
ctgtcaaaactaggctttgagacaaaacgtgttatgtcactcataaatcctgcagacacttaca
tggtaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 294
Transcript exons: 1116142-1116235,1116319-1116518
GTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAGGCTTTGAGACAAAACGTGTTATG
TCACTCATAAATCCTGCAGACACTTACATGGACCTTAACATAGGAACAGCATTATGGTTAGCTG
CTCGTGGTGATGGTTGGATTCACGAAGATAATGGAAATCCAAGTGTAGAGGAAAATAACCAGCG
GGTCAAGTATAAGTCCGATGCTAGAATCCTGCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCC
GGTTACGGTAGGCACAGAACTAAATATCGAAATGGAAG

Genomic sequence GTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAGGCTTTGAGACAAAACGTGTTATG
TCACTCATAAATCCTGCAGACACTTACATGGTAAACCTCAAAGTCTTGAGCATTGTGATTACAT
TCCTCCGAACTTGATGTGAATTATTCAATCTTTTTTTGCTATGTTCTAGGACCTTAACATAGGA
ACAGCATTATGGTTAGCTGCTCGTGGTGATGGTTGGATTCACGAAGATAATGGAAATCCAAGTG
TAGAGGAAAATAACCAGCGGGTCAAGTATAAGTCCGATGCTAGAATCCTGCTTGTTGGCGCTGG
TGCTGATGAGCAATGTGCCGGTTACGGTAGGCACAGAACTAAATATCGAAATGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.352028687
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020