Detail information of Zm00001d030572_circ_g.1


General Information
CircRNA Name Zm00001d030572_circ_g.1
ID in PlantcircBase zma_circ_000714
Alias circ2590
Organism Zea mays
Position chr1: 144844165-144848709  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d030572
Parent gene annotation Transcription factor TFIIE alpha subunit
Parent gene strand +
Alternative splicing Zm00001d030572_circ_g.2 Zm00001d030572_circ_ag.1 Zm00001d030573_circ_g.1 Zm00001d030573_circ_g.2
Support reads 12
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d030572_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGCTGCAGCTGCTAATGATGGTCAACCAATTGCTAAGGAGGGAGAAGAGAAAGTAAAGCTG
CACACACATTCATACTGTTGCTTGGATTATGCTCAGgacgaccgtgggttcgggaggaagattt
ggctaaagcattgaagctccactcgaaacagctgcgtcgcattctccgtttctttgaagaggag
aaactagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGACCGTGGGTTCGGGAGGAAGATTTGGCTAAAGCATTGAAGCTCCACTCGAAACAGCTGCG
TCGCATTCTCCGTTTCTTTGAAGAGGAGAAACTAGTCACGAGGGATCATCGAAAGGAGGTTAGT
TTTATTTGTGTTTTGATTTGTTGTTGAACATGCATAGCTGCAACTCCCTTTTGTAGATATGAGC
AAGTTCCAACCACCAACTGGTGGCAAAATGTGTATGTTGTCTATTTATTTAAATGACGTCAAGC
TGTATGGAAGATAATTCAACATTTTCAAGCCATGGAAATGTGTGTGACACTCAACAAGTAACTA
GGTATGTAGGTGGAAAGAAAATTATTCATTTATAGTCAAGGTTTTAAAGTCGGGCGACTAGTCG
ACGACTAGTCGAGAAGTCGATGCAAAGGTAAGGTGATAGTCGATCTGAACGACTCGACTTTCTC
TACTAGTCGCTCGACTCGTTGACTAGTCACGACTAGTCGCAGCAGTTGAGTCGGGCGACTTATT
TGGGCCTAGGTATAAAAAAGTGAGCCCACCCAGCCATCTCAACCCTAGTAGGTAGGATGCTAAT
GCACAAGTTTTCTACCTTATTTATCTATGGATATGGAATGAGTCATGACTTGATGAGCAGTGGC
GAAGCCAGGATTTCTCTAAGTATAGGGCTGGATATAACACTAAAAATTATTCATACCGGCTAAA
AAATTTAAATCGAAAAATACATAGATAATGGCACACATGAACTTTATTTGGACACAATAATTGT
AATTAAAATAAAATTGACTTAAACAAACGGTTAACTAATTAAAAATAATAATAGATCTCCATCT
CTATAACCAATTTATCAATTGTTTGGGTGGCTTTCATTAGCAAGACAATACTTGTTTACATCAC
CTGCAGAAAGCTTAAAGAAGAAAAAAGTGATGTTTGGTTTATTTGAAGTTGAATGTTCTCAATC
CTCAAACAGATTTTAGCCGGAGATTTCAGCAAACCTGATTTCAGCAAATCTTCTGAAGTATCCA
TATACAATACAATATCTCTAAATACTACACACTTGGCTGACTGCCTACTGGCTGTAGTCCACAG
CCGCTGGGTGCCTGCTTGCCATGCTAACTGCGCCCGCCTGCACGCCGTGAGAATTATCGCGCTA
AACCGCGCGTCGTGCGGCTGCTTGCCTGCCTGTACGCCATGCCTTCTTGCCACGCCGCTCGTGG
CTACTCTTCTAACCCTAGCTGGCTAGTCCAAGAGTAGGGCCCAGGCCCTAGTGGTCATAGGCCT
ATCTCCGCCCCTGTTGATGAGGACCAAGACAAATGGTAGAGATCTTGTGAGGCATGCAACTACT
CTGTTTGCAACATCCTTCCTTACATTGGCTAATATGTGGAAACAAAGACAAGGATTGAAAGTTC
TCTTTGTTAGTAGTGAATGGTGTGACAACAAAATGAAGAACATTGAAGTAGGAAAAGCATGTGT
TGTTTGTCACTGTGCATTTTGGCAAGAAGTAGAAGATTGCATGAGAGCTTCACAACATATTCTA
ATATTCTTGAGGATAGTTGATGGTGATCAGAGACCAACAATGGCTGAAATGTGGGCTGCCATGG
ACCATGAAAAAAAGAGCATCAAAAAAGCTTTGGAGCACAAAGAAAGAATAATAGATGAAGTAAT
TTCTATTGTTGCTACTTGCTAGCAAGTTTTGGTCTTCCTGCTATTATGAGTAGGGTCTAGATTG
TGGTCAAGTGTTCGGTTTGCCCTATGGGCATTGTACTTTGGTCCTCTTGGACCTTTTTCCTCTC
TTAATATAATGACGTGCAGTCCTCCTGCGCGTTCGAGGAAAAAAAATTCTATTGTTGATAAGAG
GTGGGACAGTCAGATGGATACCAATCTGTATAGAGCAACATTGTTTTTGAATCCAAACAAGTTC
TTCGAAACCAGAGAGAATAATAGAAGACTTGCTACAAGACTATATTCTATCCTAGGGTAAGCCC
ACTACCTCTCCTTCTATCCTAAGCCTCTCCATCTGTCTCCACAGTCGACAACCACACGACTCCT
CAGCCACACGACTCCATCCTCCCAACTGTCGCTCCCAGCCGCCACTAGTGTTTCTCTCTCCCCG
CTGTCTCCCTCTCTCCTGTGTGTCGCCGCTATGCTGGAGCCGCTGCACGCTGCTGTTGGAGGAG
CCGTCGCCGCGCCATGTTGGAGGAGCCGCCATCACGCCATGGAGGAGCCACCGCGTCACTGGTA
GAGTTACCGACGGCCTCTCCCACTCGCCTTATGTGCCGGAGTAAGGCGAGCAGGACACCTTATG
TCGTCGGGGCGCCTTACCGCCTAGGCGACGCTTTAACAACTATATGACAAAATATCAAGGAACG
TTATGTGGTGGGCTTTGGGGCAAACATAACGTTCCAATGAAGTATGTCGTGACTCATTAAGGAC
ATAAACACCAATGTCGTGACTAGTGTCCGAACAAGTGGATACATGAATGACTTCTCGATTAGAA
TAGGACTACATCAGGGATCAGCTTTGAGTCCTTACCTTTTTGCCTTGGTAACGGATAAGGTCAT
AAGGGACATAAAGGGGATATCCCTTGGTGCATGCCTTTTGCAGACGATGTAATGCTAGTTGATG
AAAGTCGGGTAGGAGTAAATAGGAAACTAGAGTTGTGGCCTGAAAGAGTCCAAAGGTTTTAGAC
TCTGTAGAAGTAAGACATAATATATGAGATGTGATTTAGGCACAACACATGTGGAAGGAGATGT
TAGTTTGGAAGGTTAAGTAGTGCCTAGGATCAATGCTATAGCGAGAGGCGGGGATATTGATGAA
GATGTTAGCCATAGAATCAAAGCAGGGTGGATGAAGTGGCGCCAAGCATCTGGCGTTCTATATT
ACAAGAGGGTACCACAGAAGATAAAAAGCAAGTTTTATAGGACAATAATTAGACTCATTATGTT
GTATGATGCAAAATGTTGGCCCACAAAAAGACGACATGTTCAGATGATAAGTGTTGTAGAAATG
CGTATGCAGTGTTGGATTTGTGGCCATACAAGAAGGGATCGAGTCTAGAATGGTGATAGGTTAG
GGGTAGCACCAATCGAAGAAAAGCTTGTCCAACACCGGTTGAGATGGTTTGGACATGTCCAATG
GAGACCTCCAAAGGCGCCAATGCGTTAGTGGGATCCTAAGGCATGATAGTAACGAGAAGAGAGG
AAGACCGAAGTTGATATGGGATGAGGCAGTATAAGGAGACTTGAAAGGATGGATATACCCAATG
ATTTAACCTTGAATAGGAGTGTATGGAAAACAACTATCCATGTGCCTGAACCATGACTTGTGGG
TTTGTTGGGTTTTTTAACTCTAGCCTACCTAAACTTGATTGGGATAAAAGGCTTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGATAGTTATCACTTATTTCAAGTCGGGCGACCAGCTGGTCGTCCCA
GAGGACCGACCAGGCGCCTAATCGCGATTAGGGCGACGATTAGGACGCCTAATCGGTCCTGGTC
GACCTCAGGTCGTCTCCTAATCGTCCTATACAATTTCTGGACATATATATGTATATAGCTATAT
ATAACAAGCAATACTGCAATAGCCAATAGGCTAGGCACTATATAAGTCTGAAACTCTGAACTGA
GTCTGAAATTACAAGCAGTGAAGCAGCAGAAATGAAAGTCTGAAATTGTAACTAGAGACTGCAG
AATGCACTAGTGCTGTGATGGTAAGAACCAAGAAGTCAAGAACAACTGACCGCAGAGTGTAGAC
ATACTGATAATAAGATAGAAAAGGGTAAGAAGGAAGGGACCAACACCAGTCATCAGTTCCTCTT
CGTCACTGCTCACTGGTGTTGGTCTGGAGACAACGCTGGTGGAGTCCTAGAGAGCCGGCGCCCG
GTGTATTGGAGCAGCCGCCGGTGAATGCACTGGACAAATGACGGCAGTAGAGGGCAGACAATGG
GCAGGGGCGCAGGCAGGGTTTGGGTTACGACAGCGCTAGGGTTTCGGCAGGGGAGGAAAGCGGT
TTATATTGCTTACTGTAGATGGGCCAAAAAAGGATGAAGCCCAATAGTAAACCCTAGCCGCCAC
TGGACGACCAGAAATCAACTAATCGGACGCCTAATCGGGCGATCTGGACGCTTAATCGACGATC
TGGACGCTTAATCGACGTTCTGGACGACCAGAACGTCTGATCGCGTCGTTCGGCTAATCGGCCA
CTTACAGGTGACCAGCCCGACTAATCGCGATTAGTCGGACGACTTGAAAACAGAGATAGTTATC
CAACATGAAGTTGGTGGCTGGCCGCAGAAATTTGTATCTAACAATTACTTGAATAGTTACATTT
CTCGCTATCTGGAAGTGTGCCAGTGAATATCTTATGATTTTGGTATTTTCTTTGTTCTTTGGTG
CTGCAGTCAGCAAAAAACGCAAAAGCACATAATGCTGCAGCTGCTAATGATGGTCAACCAATTG
CTAAGGAGGGAGAAGAGAAAGTAAAGCTGCACACACATTCATACTGTTGCTTGGATTATGCTCA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.021807312
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b