Detail information of BGIOSGA016248_circ_g.1


General Information
CircRNA Name BGIOSGA016248_circ_g.1
ID in PlantcircBase osi_circ_014287
Alias Chr04:19104359_19106106(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16262150-16263898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016248
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016248-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACTTCCTGATGCAGTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCA
GTAGATCCAATGGGATTGTTTGTGTCAACATCTCAGggaatgggaatgacattgacattagatg
acctgaaaactgcactattgatgcccaaggagttagcatctgggtttttacttcaatactcggt
cagttccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATGGGAATGACATTGACATTAGATGACCTGAAAACTGCACTATTGATGCCCAAGGAGTTAG
CATCTGGGTTTTTACTTCAATACTCGGTCAGTTCCCAAACTTGCTGGCCACTTCATTTCATAAC
CTTACAGGCCATGAGATCATCATTTCAATTAAAAAACAAAATAGCTGCAGTTTTGGACTTGCCT
ATTACTAGAGGTGTAGGAACCTTTGTTGAATCATTTTCGTCAAAAAAAAGATCCTTTGTTGAAT
CAATGGACAGATGTTCTATACATTCATCAAGATTATCATGTGCAGCTGACATGCTATGCATTTA
GAAAAAAACATATCGAATTCTTATTTGTTTGTACACTACCAGTGCAGAGGATCGTACATTTAAA
CTTCATTGTGATTATGCATGTTTTTGTGGTTTGCTGTTTCCATGTTATATCCAAAAGTCTAGAG
CTAATGATTTATGTACAGGTGATGCCACTGTCAGGATTTCTCATCAGCAAGCTATTAAACTTAC
CATCCTATTATGCTGCTGGATTGATATTGGTGTCCTGTTGCCCCTGGAGGTGTGCACACACTTT
AGTCTTTTTGTTTATATTGGTGCCAGATTTTAAACTGAGAAAGGCAAATACTCTTTGCAGGCAC
AGCAAGCAACATTGTTACATATTTAGCAAGGTAATGAGAAAAAATATTAATGTACTCTCTCCAT
CCCACAATAAGGGCACTTCTAGTATTTGAATTTTGTCCCAAAAAGAGTGTACTTCTAGAGTACT
ACTTTTCCTTCCAATCATCAATCATTCAAATTTCTCCCCATCTTACCCCCAAGCACCCTTGGCT
CCCAATCACCTCATTTAATGAGGGGCATCTAGGTCATTTCCCACCCCTGATAATGTTTTTTGAA
TCCTAGAAGTGCACTTATTGTGGGACAGAGGGAGTAGCAATCTTCATTTAGTCATGGCCTTGTT
ACAAAATGTTGGAAAATGTGTCAATCTGTTGATAATTTTTCACGCTGACTATGACACAAGCCTA
TGAAATAGGGAAAATTGCCAGAATTCGACAAAGTTGAGGTGCTTTGCAGATTTGCCACATGGTT
GAGGGTAACTAGGGGGATATCCTCTCATTTGCCACATTATCACTTGAATTACCCAAAGTATCCC
TGTCTTCTTCCTCTCTTACTGTCAAGTGGACCCCAGCAGCCAGTATCCTAACTATATGGTTGAA
TTAGTGGATCCCCGTGATGCATAAAACAGAAATGTAAACAAAATAACCTGTTCTCTAGCTGAGT
AATAAATTTCAGGTGTATCTTGAATTAGACTGGAGTTCATTCTCTCCTTTGACTTTTGACGCAA
ATGTATTTTCTATGAAATTGAGCATTTGCATCAAATTTCTATAGCAAAAATATTAGAAGATGAA
TTATTAACTGCACAATATGTGGACAAATTTGTGGCACTATGAGAGGACATCTTTCTGTTCTTTT
TAGTATCATGAAAATGCACACAATTAACACAAATTAGCATCACTGTGTGGCAGGGGAAATGTTG
CTCTTTCGGTACTGATGACAGCAGCAAGCACTTTTGCTGCAGCGGTAATGAACCACTCTCAGAT
CTGTTTTTATCTTTAAACTGAACTCCAAAAGCTCTTTTTTATGCTTTTGTAACTTCCTGATGCA
GTTCTTAACTCCTCTTCTGACATCCAAACTGGCGGGACAATATGTTGCAGTAGATCCAATGGGA
TTGTTTGTGTCAACATCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021