Detail information of POPTR_0016s02870_circ_g.1


General Information
CircRNA Name POPTR_0016s02870_circ_g.1
ID in PlantcircBase pop_circ_003818
Alias Chr16:1613370-1616155
Organism Populus trichocarpa
Position chr16: 1414440-1417225  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0016s02870
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered POPTR_0016s02870.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTCTGTAAAACAGGAAAAACGACCCCATTGGCTGTGATCTGATGTTTCAAAAAAGTCCCG
CAAAAAACAAAAGGCTGCATAGGGCTTTAACCATTGcgtcatgtagctgtattgagaaggaata
ccaaactccaggtcaggttcactggacatacgttgaatgcgtaaacctatcaatcctagttctt
gcatgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCATGTAGCTGTATTGAGAAGGAATACCAAACTCCAGGTCAGGTTCACTGGACATACGTTGA
ATGCGTAAACCTATCAATCCTAGTTCTTGCATGACCTGCAAACATTATCCAATCATGCTTAATT
TTCATGGAATGCAGATTGGAAGAAATAAAGTAAGCGAAAAAGAGAAGAGATGTAGGCAGTTAGA
GTTGAAGTTGGGAAGGATTCGACAAACATACAGGGTGAACACAAGCAGGAATTAGACCCAGATC
TTCCCCACAGGCTAGCATATCTGATGAGTCCAGGAGAGCAGGCAAAGTCTTCAAAGCATTTTGC
CTCCATAGATTTTCTTGCCGATGGAAATAGTAATCATAGTACAGTCTTTTGAGAACATTTTTGC
TGTATTGCATAACAAGTAAGAGAAGCTATATCAGCAGGAATTGAGAGGTTTGATGAGATGCAAG
GAAACAAACTAGTACTTGGTTATAGAACACCAGAATTATTGGTAAGCAAAAAGGGGATGAAAAG
CTTTAGTTTACTACATTCTTCTATGGGTCACTCAATCCAAATGAACTAGGAATTTCTCACAGTA
GATATGATTAGGGTACCTGTGGTCATCCAAATCCTGAAAACTTGAAGTGTCCTCAAGATTGAAA
CGAGGGTAGAATTTACTTTCATCCTCAGGATCTCTAATAAGAACTATATTCTGCAAACAGAATT
AATAGATAAAAACCAAGAACCGAGACTAGTAATGAGAACAACCATCATCAGTCACTCTAAAGCA
GTCAAGAGACAGGTCTAACATAAATTCCATATAACAAACTTGTGGTAATATAAATATTTTTCCA
CTATATGTTACCTTCAGAAGATCAAACAGGTCACGGCGTATCTTGTCCTCGCTCTCCAATAACA
TGGACTTTTCTGCAAGCATCTTCAACTTGGAAGCAATCTTTTTCTCCGTGTCACAATCCTCCTT
GAACTAGATTAATTTGAAGAAATATGAGTCAACTAATTTTTCATGCCAAAACAAATGCACCAAA
TATGATACAATATGATTGAAGCAGATATAAAAAGATATGAGATAATGAGAAGGGATAAGAATTC
AGAATCACTTTCCTAACAGTAAGACTAAAATTGAGGCGTAGGGAATATAAGTCGGAGCTTTAAC
AGAATGGAGACCATAAAACAACTTGAAAGAACCAAGAAGCGATTCAATGGAAAAAAATTAATAT
CAGAAATTGCAGACAGGTCAGTCAGTTCATGTGACAAGGTTCCTTTATGACATGAATTCACGAG
CCTATTTGAGGCTCGATGTGAGTCACAAATTCATCACTAGACCAACCTAGGTTCAGTCAAAATG
CTAAGAGGTAACCTCATATTATTGACCAGAAACATAAATTTACCACATAGCGGCCCTTCTGATA
ATCGTTCAGAAAATTTGACACAATAAAGGTCCAAGAAGCTCCAAATCTTTCCTGATATCAGGAA
AAAAAAAAAAAAAGAGAAGTGTAAATCAACACGCTCATAGTATCTGATTTAGTTTTTAGGTCAT
ATGTCAAATGCAATGAGTTGATAACCATCAGAAGTGTGGACCATATAGCCAACACAGAAAAGTC
AGTAACCTGTACAAATTCCTGCCGGATATATGGGAGGCTCAGGCGATCAAAGTCCCAAATTCCT
TCTCTTTCAAGTTCTTCCTGCAGCAGATGCATTATTTGAACATGTTTAATAGAACATGAAAAAG
GAATTTCTCTCACAAGTGCTTCAAGTACTAGTGCTGCAAGGGTAGCTTAGGCTTTATAAGAACT
CCAGTTCCCTATACCAAATCCTAAAATTCTCTTGCATCACTTAAAACTCACTTTTCATGCAGGA
AGGCTAGGAGGGTCCTACTATACCTTACTTAGAGGGATAGATGGTCTGAATTTTCCAATCAGAC
CTGTCATGGCATGCTCTGGAAGCTCCCAGATCCTAAAGAAACCCAGAATATGATCAATCCTGTA
AGCTGTAAAGTATTTTGCCATCTGTCATAGAAACAAATAAGTTTTTCATCAGAAAGAGATGAAA
GCTCAGTTAAGACAAGATCATCGTATTCAGAGTACAAAACCTGTGTTAGACGAGCACGCCACCA
AGCATAGTTATCTTTTGACATTTCCTCCCAATTATAAGTTGGAAAGCCCCAATTCTGCCCATTT
TTATCAAAGTAATCTGGAGGTGCTCCTGTGGAGGTGTTCATGCGGAACAAATTTGGATAGACCC
AGGTATCTACGCTGTTTCTGTCTACACCAATAGGTAGATCTCCTTTCAATATGACACCTTTCTT
TCTTGCATATTCTGCAGCTTCTGTCAACTGTCAGTTCATTATGACACAAACAGTATAAGACCGA
CTGCTGGCTTAAGAGCAATTACAAATGGGAGACAAATATCATCAGACCAAATGAAAATACCTGT
GTATGCAAATGGAATTGGATATAATAATGGAAGCGAATTATGTCATGGTGCAAGCTGTCTTTTG
AGACAAGTTTCTCAACCTGCATGAAAATGGTGCCATTTTGTCAGAGAATTTAAATAACATAACT
TTGGTTATGAAATTGAAACAAAGATCTATATTACCTAGTTATCATGTATGATAAGATCCAATAA
AATTTGACGAATGATATTTAATCTTAGGTTAGATGAGTGAAAACCCAAAGAGATAACAACCTTT
TTTTCTGTAAAACAGGAAAAACGACCCCATTGGCTGTGATCTGATGTTTCAAAAAAGTCCCGCA
AAAAACAAAAGGCTGCATAGGGCTTTAACCATTG
Conservation Information
Conserved circRNAs NA
PMCS 0.154086962
Functional Information
Coding potential Y
Potential coding position 1417172-1414534(+)
1416658-1414442(-)
Potential amino acid sequence MFQKSPAKNKRLHRALTIASCSCIEKEYQTPGQVHWTYVECVNLSILVLA*(+)
MNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWE
LPEHAMTGLIGKFRPSIPLSKEELEREGIWDFDRLSLPYIRQEFVQERFGASWTFIVSNFLNDY
QKGRYVFKEDCDTEKKIASKLKMLAEKSMLLESEDKIRRDLFDLLKNIVLIRDPEDESKFYPRF
NLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQENLWRQNALKTLPALLDSSDMLACGEDLGLIPA
CVHPVMQELGLIGLRIQRMSSEPDLEFGIPSQYSYMTQWLKPYAAFCFLRDFFETSDHSQWGRF
SCFTEKKVEKLVSKDSLHHDIIRFHYYIQFHLHTQLTEAAEYARKKGVILKGDLPIGVDRNSVD
TWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDH
ILGFFRIWELPEHAMTGLIGKFRPSIPLSKEELEREGIWDFDRLSLPYIRQEFVQERFGASWTF
IVSNFLNDYQKGRYVFKEDCDTEKKIASKLKMLAEKSMLLESEDKIRRDLFDLLKNIVLIRDPE
DESKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQENLWRQNALKTLPALLDSSDMLAC
GEDLGLIPACVHPVMQELGLIGLRIQRMSSEPDLEFGIPSQYSYMTQWLKPYAAFCFLRDFFET
SDHSQWGRFSCFTEKKVEKLVSKDSLHHDIIRFHYYIQFHLHTQLTEAAEYARKKGVILKGDLP
IGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAK
YFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLSKEELEREGIWDFDRLSLPYIRQEFVQ
ERFGASWTFIVSNFLNDYQKGRYVFKEDCDTEKKIASKLKMLAEKSMLLESEDKIRRDLFDLLK
NIVLIRDPEDESKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQENLWRQNALKTLPAL
LDSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMSSEPDLEFGIPSQYSYMTQWLKPYAAF
CFLRDFFETSDHSQWGRFSCFTEKKVEKLVSKDSLHHDIIRFHYYIQFHLHTQLTEAAEYARKK
GVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWW
RARLTQMAKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLSKEELEREGIWDFDRLSL
PYIRQEFVQERFGASWTFIVSNFLNDYQKGRYVFKEDCDTEKKIASKLKMLAEKSMLLESEDKI
RRDLFDLLKNIVLIRDPEDESKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFHRQENLWRQ
NALKTLPALLDSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMSSEPDLEFGIPSQYSYMT
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021