Detail information of Os01g0200700_circ_g.10


General Information
CircRNA Name Os01g0200700_circ_g.10
ID in PlantcircBase osa_circ_040378
Alias NA
Organism Oryza sativa
Position chr1: 5478858-5479299  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRI-long
Parent gene Os01g0200700
Parent gene annotation Similar to Metallothionein-like protein type 3 (MT-3) (MWMT3). (
Os01t0200700-01)
Parent gene strand +
Alternative splicing Os01g0200700_circ_g.1 Os01g0200700_circ_g.2 Os01g0200700_circ_g.3 Os01g0200700_circ_g.4 Os01g0200700_circ_g.5 Os01g0200700_circ_g.6 Os01g0200700_circ_g.7 Os01g0200700_circ_g.8 Os01g0200700_circ_g.9 Os01g0200700_circ_g.11 Os01g0200700_circ_g.12 Os01g0200700_circ_g.13 Os01g0200700_circ_g.14 Os01g0200700_circ_g.15 Os01g0200700_circ_g.16 Os01g0200700_circ_g.17 Os01g0200700_circ_g.18
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGTCTGTAGCATATACTACAACCACCATAAAAAAACTTCATCAAAAATATTTTAAAATTAACA
GAAAAATAGTAAGAACTTTACATACGAGATTAGATAgtaactaactaactcaatatcgatcaac
caaagcatatttctcgtctgaattttacagttttaatttcttcgtctttgctctcaaacacaca
cacgatac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 442
Transcript exons: 5478858-5479299
GTAACTAACTAACTCAATATCGATCAACCAAAGCATATTTCTCGTCTGAATTTTACAGTTTTAA
TTTCTTCGTCTTTGCTCTCAAACACACACACGATACTATCGATCCTGACGTTCGCATACGAGAC
ACGTACGGCCTAATGTATTCGTTCATGCTTATATTTATCAGACAAAATTTAAATTTTCAATCTT
AAATTTAAAACTGATTTTAAGTTTTTTATTAAAATTTATTTTTCACCCTCTACTTTTAGTTGCT
AAAAATATATATATGAATTTTATTTATAAATTATTTTCGTTTGCAATTATATCGTTTGACTTAT
TCCACGAATAAGCTAAATGATGGGGTCTGTAGCATATACTACAACCACCATAAAAAAACTTCAT
CAAAAATATTTTAAAATTAACAGAAAAATAGTAAGAACTTTACATACGAGATTAGATA

Genomic sequence GTAACTAACTAACTCAATATCGATCAACCAAAGCATATTTCTCGTCTGAATTTTACAGTTTTAA
TTTCTTCGTCTTTGCTCTCAAACACACACACGATACTATCGATCCTGACGTTCGCATACGAGAC
ACGTACGGCCTAATGTATTCGTTCATGCTTATATTTATCAGACAAAATTTAAATTTTCAATCTT
AAATTTAAAACTGATTTTAAGTTTTTTATTAAAATTTATTTTTCACCCTCTACTTTTAGTTGCT
AAAAATATATATATGAATTTTATTTATAAATTATTTTCGTTTGCAATTATATCGTTTGACTTAT
TCCACGAATAAGCTAAATGATGGGGTCTGTAGCATATACTACAACCACCATAAAAAAACTTCAT
CAAAAATATTTTAAAATTAACAGAAAAATAGTAAGAACTTTACATACGAGATTAGATA
Conservation Information
Conserved circRNAs NA
PMCS 0.141375302
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study