Plant Circular RNA Database

Detail information of Os07g0633100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0633100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_034912
					
						Alias
						Os07circ18112
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 26260895-26262105  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os07g0633100						
					
						Parent gene annotation
						
							Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-01)
;Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-02
);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-0
3);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-
04);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100
-05)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0633100_circ_g.1 Os07g0633100_circ_g.3 Os07g0633100_circ_g.4 						
					
						Support reads
						2/3
					
						Tissues
						leaf and panicle/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0633100-05:2
Os07t0633100-03:2
Os07t0633100-01:2
Os07t0633100-04:2
Os07t0633100-02:2

General Information
CircRNA Name	Os07g0633100_circ_g.2
ID in PlantcircBase	osa_circ_034912
Alias	Os07circ18112
Organism	Oryza sativa
Position	chr7: 26260895-26262105 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os07g0633100
Parent gene annotation	Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-01) ;Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-02 );Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100-0 3);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100- 04);Similar to Glucan endo-1,3-beta-glucosidase 4. (Os07t0633100 -05)
Parent gene strand	-
Alternative splicing	Os07g0633100_circ_g.1 Os07g0633100_circ_g.3 Os07g0633100_circ_g.4
Support reads	2/3
Tissues	leaf and panicle/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0633100-05:2 Os07t0633100-03:2 Os07t0633100-01:2 Os07t0633100-04:2 Os07t0633100-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATGCTGCATCTTTTCAATCTTTTGGC
CAACATTGTACTGCTCCAAGAACCCTCCAAGAGCACtggggtcggtggcggtggtggtggcggt
gccgttgaagctgcaggtggcgccggcgccggagttgcgctggtagtagtcgttgtaggcgtag
gaggccaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 436
Transcript exons: 26260895-26261233,26262009-26262105
TGGGGTCGGTGGCGGTGGTGGTGGCGGTGCCGTTGAAGCTGCAGGTGGCGCCGGCGCCGGAGTT
GCGCTGGTAGTAGTCGTTGTAGGCGTAGGAGGCCAACGCCGGCAGGTTGTTCGCCTTGTAGCAC
GGGCCCCCCGGCTGGATCGCCGCGCAGTTGGCGTGGCCCTGGCCGCAGGCCCAGTTCAGCCCTT
CCTGCAGCGCCGTCGGGTCCGCGTTCGGCAGCGCCACGCAGAACATCCCCGTCGCCAGCGACCG
CCTCTTGCCCTCGCCCTCTGTCGCCGGGGAGATCTGTGGACCGATCGCCTCGGCCTGGCCGCCG
CTGCTCTCAAGAAGACTCCCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATGCTGCATC
TTTTCAATCTTTTGGCCAACATTGTACTGCTCCAAGAACCCTCCAAGAGCAC
						
					

						Genomic sequence
						
							TGGGGTCGGTGGCGGTGGTGGTGGCGGTGCCGTTGAAGCTGCAGGTGGCGCCGGCGCCGGAGTT
GCGCTGGTAGTAGTCGTTGTAGGCGTAGGAGGCCAACGCCGGCAGGTTGTTCGCCTTGTAGCAC
GGGCCCCCCGGCTGGATCGCCGCGCAGTTGGCGTGGCCCTGGCCGCAGGCCCAGTTCAGCCCTT
CCTGCAGCGCCGTCGGGTCCGCGTTCGGCAGCGCCACGCAGAACATCCCCGTCGCCAGCGACCG
CCTCTTGCCCTCGCCCTCTGTCGCCGGGGAGATCTGTGGACCGATCGCCTCGGCCTGGCCGCCG
CTGCTCTCAAGAAGACTCCCTGTAAAGATTTTATGAGATGAGTTCTGAAAAGTTTAACAAGGAA
ACTTTTTTTTTAAAAAAAATCAAGATAATATAATTTCTCTTAACATAAACTCTCAGTATCTGTA
GAATTAAGATGCACATAGTCTATAATAAAAAAAAAGACATGATAACAAATACTCCCCCTTTCTT
AAATATTTGACGCCGTTGACTTTTTTAAAACATGTTTGACCGTTCGTCTTATTAAAAACTTTTA
TAGAATATATAAAACTATATGCATATATAAAAGTATATTTAACAATGAATCAAATGATATGAAA
AGAATTAATTACTTAAATTTTTTAAATAAAACGAACGGTTAAACATGTTTAAAAAAATCAACGG
CGTCAAATATTCAGGGACGGAGGTAGTAGTACCGTAGCAATCTACAACCATCATCTGAAACTAG
TAATCCATGTTCAGATTCAGAAAAGGTAGTGCATTTATCATGCTGTAGAGTTCTGACTAGTGGG
CTGTATATTCAGATATTCTTCAGGTTTAGTAAAAAGTTAGTAGTAATTTCAGTCAGGTGCAGTA
AGTGGCAGCCTGATCATTTTTCACTGGAGACATGAAAAGGATGGCAAGCAATTCCGGGCTAAGC
AAAGCTTCCCATGCAAAGTTTTTGATATTTTGCAGCTTAAAAGTCATCCACAAACAGTTGATCA
ACTTCGTATCAAATTGGCAATGCATTTCAAAGGTGTCGTTAGGAATCTCAATAAATGAGAAAAA
GAAAGCGAGATAGCTACACTACACACCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATG
CTGCATCTTTTCAATCTTTTGGCCAACATTGTACTGCTCCAAGAACCCTCCAAGAGCAC
						
					

			
		

Sequences
Splice junction sequence	CACCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATGCTGCATCTTTTCAATCTTTTGGC CAACATTGTACTGCTCCAAGAACCCTCCAAGAGCACtggggtcggtggcggtggtggtggcggt gccgttgaagctgcaggtggcgccggcgccggagttgcgctggtagtagtcgttgtaggcgtag gaggccaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 436 Transcript exons: 26260895-26261233,26262009-26262105 TGGGGTCGGTGGCGGTGGTGGTGGCGGTGCCGTTGAAGCTGCAGGTGGCGCCGGCGCCGGAGTT GCGCTGGTAGTAGTCGTTGTAGGCGTAGGAGGCCAACGCCGGCAGGTTGTTCGCCTTGTAGCAC GGGCCCCCCGGCTGGATCGCCGCGCAGTTGGCGTGGCCCTGGCCGCAGGCCCAGTTCAGCCCTT CCTGCAGCGCCGTCGGGTCCGCGTTCGGCAGCGCCACGCAGAACATCCCCGTCGCCAGCGACCG CCTCTTGCCCTCGCCCTCTGTCGCCGGGGAGATCTGTGGACCGATCGCCTCGGCCTGGCCGCCG CTGCTCTCAAGAAGACTCCCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATGCTGCATC TTTTCAATCTTTTGGCCAACATTGTACTGCTCCAAGAACCCTCCAAGAGCAC
Genomic sequence	TGGGGTCGGTGGCGGTGGTGGTGGCGGTGCCGTTGAAGCTGCAGGTGGCGCCGGCGCCGGAGTT GCGCTGGTAGTAGTCGTTGTAGGCGTAGGAGGCCAACGCCGGCAGGTTGTTCGCCTTGTAGCAC GGGCCCCCCGGCTGGATCGCCGCGCAGTTGGCGTGGCCCTGGCCGCAGGCCCAGTTCAGCCCTT CCTGCAGCGCCGTCGGGTCCGCGTTCGGCAGCGCCACGCAGAACATCCCCGTCGCCAGCGACCG CCTCTTGCCCTCGCCCTCTGTCGCCGGGGAGATCTGTGGACCGATCGCCTCGGCCTGGCCGCCG CTGCTCTCAAGAAGACTCCCTGTAAAGATTTTATGAGATGAGTTCTGAAAAGTTTAACAAGGAA ACTTTTTTTTTAAAAAAAATCAAGATAATATAATTTCTCTTAACATAAACTCTCAGTATCTGTA GAATTAAGATGCACATAGTCTATAATAAAAAAAAAGACATGATAACAAATACTCCCCCTTTCTT AAATATTTGACGCCGTTGACTTTTTTAAAACATGTTTGACCGTTCGTCTTATTAAAAACTTTTA TAGAATATATAAAACTATATGCATATATAAAAGTATATTTAACAATGAATCAAATGATATGAAA AGAATTAATTACTTAAATTTTTTAAATAAAACGAACGGTTAAACATGTTTAAAAAAATCAACGG CGTCAAATATTCAGGGACGGAGGTAGTAGTACCGTAGCAATCTACAACCATCATCTGAAACTAG TAATCCATGTTCAGATTCAGAAAAGGTAGTGCATTTATCATGCTGTAGAGTTCTGACTAGTGGG CTGTATATTCAGATATTCTTCAGGTTTAGTAAAAAGTTAGTAGTAATTTCAGTCAGGTGCAGTA AGTGGCAGCCTGATCATTTTTCACTGGAGACATGAAAAGGATGGCAAGCAATTCCGGGCTAAGC AAAGCTTCCCATGCAAAGTTTTTGATATTTTGCAGCTTAAAAGTCATCCACAAACAGTTGATCA ACTTCGTATCAAATTGGCAATGCATTTCAAAGGTGTCGTTAGGAATCTCAATAAATGAGAAAAA GAAAGCGAGATAGCTACACTACACACCGGATGCGTCTGCGAGGAGAAAGGCGAACAGAAGAATG CTGCATCTTTTCAATCTTTTGGCCAACATTGTACTGCTCCAAGAACCCTCCAAGAGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007355* osi_circ_017384 						
					
						PMCS
						0.250517912

Conservation Information
Conserved circRNAs	osi_circ_007355* osi_circ_017384
PMCS	0.250517912

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26262013-26260965(+)
26262045-26260927(+)
26262077-26261223(-)
						
						Potential amino acid sequence
						
							MRLRGERRTEECCIFSIFWPTLYCSKNPPRALGSVAVVVAVPLKLQVAPAPELRW*(+)
MLHLFNLLANIVLLQEPSKSTGVGGGGGGGAVEAAGGAGAGVALVVVVVGVGGQRRQVVRLVAR
APRLDRRAVGVALAAGPVQPFLQRRRVRVRQRHAEHPRRQRPPLALALCRRGDLWTDRLGLAAA
ALKKTPGCVCEEKGEQKNAASFQSFGQHCTAPRTLQEHWGRWRWWWRCR*(+)
MLAKRLKRCSILLFAFLLADASGSLLESSGGQAEAIGPQISPATEGEGKRRSLATGMFCVALPN
ADPTALQEGLNWACGQGHANCAAIQPGGPCYKANNLPALASYAYNDYYQRNSGAGATCSFNGTA
TTTATDPSALGGFLEQYNVGQKIEKMQHSSVRLSPRRRIRESS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26262013-26260965(+) 26262045-26260927(+) 26262077-26261223(-)
Potential amino acid sequence	MRLRGERRTEECCIFSIFWPTLYCSKNPPRALGSVAVVVAVPLKLQVAPAPELRW(+) MLHLFNLLANIVLLQEPSKSTGVGGGGGGGAVEAAGGAGAGVALVVVVVGVGGQRRQVVRLVAR APRLDRRAVGVALAAGPVQPFLQRRRVRVRQRHAEHPRRQRPPLALALCRRGDLWTDRLGLAAA ALKKTPGCVCEEKGEQKNAASFQSFGQHCTAPRTLQEHWGRWRWWWRCR(+) MLAKRLKRCSILLFAFLLADASGSLLESSGGQAEAIGPQISPATEGEGKRRSLATGMFCVALPN ADPTALQEGLNWACGQGHANCAAIQPGGPCYKANNLPALASYAYNDYYQRNSGAGATCSFNGTA TTTATDPSALGGFLEQYNVGQKIEKMQHSSVRLSPRRRIRESS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0633100_circ_g.2

Address

Any questions?

Supported by