Detail information of Os10g0529300_circ_g.1


General Information
CircRNA Name Os10g0529300_circ_g.1
ID in PlantcircBase osa_circ_007799
Alias Os_ciR6866
Organism Oryza sativa
Position chr10: 20590638-20590743  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os10g0529300
Parent gene annotation Similar to Tau class GST protein 3. (Os10t0529300-01)
Parent gene strand +
Alternative splicing Os10g0528200_circ_ag.1 Os10g0528651_circ_ag.1 Os10g0528651_circ_ag.2 Os10g0528651_circ_ag.3 Os10g0528651_circ_igg.1 Os10g0529300_circ_ag.1 Os10g0529450_circ_ag.1 Os10g0529450_circ_igg.1 Os10g0529800_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os10t0529300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTCTCGTGGAGGATGAAAGCTGGTGCACCATAGTCCTTCCACACCGTGAGaagtgagccgg
cgaagcaaacctgtagttggtgtgtgtccgttctcgttgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGTGAGCCGGCGAAGCAAACCTGTAGTTGGTGTGTGTCCGTTCTCGTTGCTCGTGGTCTCGTG
GAGGATGAAAGCTGGTGCACCATAGTCCTTCCACACCGTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.318361286
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015