Detail information of AT1G09000_circ_g.1


General Information
CircRNA Name AT1G09000_circ_g.1
ID in PlantcircBase ath_circ_001519
Alias 1:2893267-2893634
Organism Arabidpsis thaliana
Position chr1: 2893267-2893634  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G09000
Parent gene annotation Mitogen-activated protein kinase kinase kinase ANP1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G09000.1:2
AT1G09000.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGATGAAGACGATATGTGTTTGATAGATGATGAGAATTTCTTGACATTTGACGGAGAAATG
AGTTCTACCCTTGAAAAAGATTGTCATCTGAAGAAGaacaatcttagcactccactaccgttac
agataaataacaccaagagcacgtaagttctgaatatctggctgaaaccaaaatttctaagatt
attttgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACAATCTTAGCACTCCACTACCGTTACAGATAAATAACACCAAGAGCACGTAAGTTCTGAATA
TCTGGCTGAAACCAAAATTTCTAAGATTATTTTGTGGGTTTATGAAAGATTTTGATGGTTTATT
GTCTGTTTCCTTTGTTTCAGTCCAGATTCTACTTGCGACGATGTAGGTGACATGTGTAACTTTG
GCAGTTTGAATTATTCACTTGTAGATCCTGTGAAATCAATCCAAAACAAAAATTTATGGCAACA
AAATGATAATGGAGGTGATGAAGACGATATGTGTTTGATAGATGATGAGAATTTCTTGACATTT
GACGGAGAAATGAGTTCTACCCTTGAAAAAGATTGTCATCTGAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.18614212
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020