Detail information of BGIOSGA001678_circ_igg.2


General Information
CircRNA Name BGIOSGA001678_circ_igg.2
ID in PlantcircBase osi_circ_002044
Alias 1:15964838|15966873
Organism Oryza sativa ssp. indica
Position chr1: 15964838-15966873  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA001678_circ_igg.1 BGIOSGA001678_circ_igg.3 BGIOSGA001678_circ_igg.4
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCAACTTTGGAAGAAGGAAGGTTGAAGAATGCACCATAACCTCCATACTGCGTATTGCGCGC
CCCAACATCTTAACCTCAAGAAGGTGATGTACCAAGctggctagagtagaactgtttcacttct
ggccttatagaatccatatctccctcaattatttctggaatatacctggatatcagcagccaat
tgtaagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCTAGAGTAGAACTGTTTCACTTCTGGCCTTATAGAATCCATATCTCCCTCAATTATTTCT
GGAATATACCTGGATATCAGCAGCCAATTGTAAGAGTCAGGAAAATTTTACTCAATTATATTAG
TTCTAACAGTACGCAAGTATTCATCCTTAGGGGAGAGTAGAGCATGAACATTTATAGCTAGCTT
GGTCTTAGAAAACTGACCTTAAAATGCCATTCAGATATACATTATACATATTTCATAAAATATA
TAGTACTATTGAGGGCTTTTGGAGAACATACAATCTGTCGAGGTGGGTTGTTCTCTGTGTGACC
AGTGAACAGTTACCGAAAAATAAATAGGCACATGCCAAGCAATCACTAGTACCTAAATGCATTC
CATATGAAGAACACATCTAAGAGTACAATTACTATTATGGTATTACCTCTACTAGAAAAGTGCA
GATACGAACTTCTCATACAGAATAGAGGGAGCATATCCGAGTTGTTTAGTGAAATCTAATTACC
AAAGTAGTGTTAGTGACCAAGAATCTAATATAAACCGTGTTTGTAGAACTTCACTTTAATTAAG
AGATGGAACGATTCTGCAATCACTGAAGTAGTCTGAAAAATTTCAGTTTCCTTTAATCACAAAT
CACACATATGATCAAGTCATTTGAACCTTGGCCTGTATATGCCCATAGGTGCTGTTAATTTTTG
TAACTGTTTTAGGAACAAGTTGAGCATTTAGATCACAGAGCATGTCAAATGGAACTCCACTACT
GATTGATATCTCTAACAAGGAATAGAGTCTTGAGGTTAGAAATTACGAAAATAAGGTCTAGTAC
TTCAATCCAAACCACGTGAATGGACGAACAGGTGAGCCCTTTGGGCATTCAACATATTAGTGTA
TTAAATTTTATCTGTGGTCTCATTTATTTTTTTTAATGTACATGTTTCATATTTGGCTGTTTAC
AGTTTTACAACACACAGTTATTCAATGAGCTCAACTGGCATTACAATGTTGGCTTAGGACTTAT
GCCATCCAGATCCTAACACAACCCAATATCTTACCAAAAATAATCCAGACTACACTTCTTTTTT
TTTTCATGTACAACCCACCAAATACTCCCCGTCCCTTAATATAACAACCTAGGACATAATATAA
CAACCTAGGACCGGATGTGACACTACATAGTACAACAAATTTGAACATGCTACTATGAAGTGTC
CTAGATTGCTATAATATGGGACAAAGGGAGTAGTACCCTATTTATGTGCCTAACGTCCCATAAA
AGAACCTAAAGAGGAGTACATTACAAATAATATCGTAAAAAATGCTTATTTTGAGCACTTTCTG
TTTAAGTGTTACTACCCCTGTTCATAAAATAAGTAAATAATTTGTTTTTTTTTTGAAGTCTACG
AAATGCCACCTTGACCACTAAATTTTATCAACTTTCATTAAAAAAATACTGCATCATTTTGATA
TAACCAAATTATATGATATAGATAACATATTTGGTCAAAACTAATATAGTTTGACAGCAAGCAT
AATAAGTGCATATTTTTGTGATCAGAGGTAGCAACAGCTATCACTTATCATTAATCAATATCTG
CAAGGAATAATTTAAATTTAATAAACAACAAAATCCAAATGAAATGAGAAAGTTGTTACTCTAC
CTTTTTCGGGTGCTTTCATAGTCTGGATCATTAGTCATCTGAAACATCTCATCGAATATACGAT
TGGCACCTCCATCAGCACAGATTCTTAGCTTTGCTGCTCTATATCAAAATCACACGCAGAGGTT
TAAAGATACATGACTGATACAGAATGTCAAAAGAACAAATGAGCAGGGACAGCTACCATGAGTC
CACAGGCGGGGCACGAATCGTGGAAGGTTCTGATTAAGAACAACTAGAGCATACTTCTTTGCTG
GAGAGTTGGCAGGCTGATGCAACTTTGGAAGAAGGAAGGTTGAAGAATGCACCATAACCTCCAT
ACTGCGTATTGCGCGCCCCAACATCTTAACCTCAAGAAGGTGATGTACCAAG
Conservation Information
Conserved circRNAs osa_circ_001692*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021