Detail information of AT2G04050_circ_g.1


General Information
CircRNA Name AT2G04050_circ_g.1
ID in PlantcircBase ath_circ_012748
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1337544-1337988  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, circRNA_finder
Parent gene AT2G04050
Parent gene annotation Protein DETOXIFICATION 3
Parent gene strand -
Alternative splicing NA
Support reads 7
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04050.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGCCAATACTGAAACCCTAGCAACTTGA
GGAATCCCAGCTCCCAATTTGTTTGACACGCGTGTGctgttccttccaatttatggaagctgtg
acaaaagccaatattatggcttgcacagcggatccgaccacaacaccacaccaaagtccttttc
cgttcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCCTTCCAATTTATGGAAGCTGTGACAAAAGCCAATATTATGGCTTGCACAGCGGATCCG
ACCACAACACCACACCAAAGTCCTTTTCCGTTCAACTCACGATTGAAAGCTAAGTATACTCCAA
CAGGAGCTCCTACAAGATAATAAGCTACCACGTTGTTCAAAGCTCCAATGTGTTGCCAACCACT
TCCCCTTGCAACCCCATTCAGAACTGCTGTGAAACCGTCGAGGATAAAGGAGAGGCAGAGCAAA
GGAGTTAGGTTAGCCACATAGTCCACAACTTCTTTGCTGTTGCTGAATGCGTAGCCTATAATGT
TTCGGCATGTGAAGAGAAGTGTGCTAAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGC
CAATACTGAAACCCTAGCAACTTGAGGAATCCCAGCTCCCAATTTGTTTGACACGCGTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.163106217
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017