Detail information of Os06g0618600_circ_g.7


General Information
CircRNA Name Os06g0618600_circ_g.7
ID in PlantcircBase osa_circ_031392
Alias NA
Organism Oryza sativa
Position chr6: 24836284-24836956  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0618600
Parent gene annotation Rgp1 domain containing protein. (Os06t0618600-01)
Parent gene strand +
Alternative splicing Os06g0618600_circ_g.4 Os06g0618600_circ_g.5 Os06g0618600_circ_g.6 Os06g0618600_circ_g.8 Os06g0618600_circ_g.9 Os06g0618600_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0618600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTGGTACTTGCAGGTATCTGTTACCTTGGAAACATCAGAAACGGTTAATCCTCGTGTAATA
CATCCTTCGAGAAGGAGCTCACCCTCAATAACCAAGgtgtggtgtcacctcaaaggaagctaaa
tcatttgctgtcagatcatcatccatcaaatggacagatgttttctctagatcctgaccgctca
aatgatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTGGTGTCACCTCAAAGGAAGCTAAATCATTTGCTGTCAGATCATCATCCATCAAATGGACA
GATGTTTTCTCTAGATCCTGACCGCTCAAATGATGATGCTGGACCACCTCTCACACCAAAATAT
GTTGAACCAGCTGGATGTAAGCCATCCTCACATACTGTTTCAGATCTGGAGTTACTATATCTCG
CTATTCTCTTTATTATAGGTTTACATAACATGTAGTCAATATTGATTTGCAGTACTAAGTTGCC
ATTACAATTTTTTGCAGCAGAAGGCTTTATGAGAGGAAGATCGTACAACATAAGAATAGATGAC
CAAGTGTTGCTTCGCTTCTCACCAAAGAATTCTGACTCAACTTATTACTTTGGTGATATGGTAT
TGTCTGATTTGATTACATGTGTAACCGCATTATCAATGTTAGAAACTTATAACTGATTATCTCA
GTTCTTCTAATTGCAGATTGGTGGAGCACTCACCTTCTTTCATGGATCTGGAACACGAAGATGC
CTAGAGGTAAAAGGTTGAGTTGAGTAAAATGTGTATTGGAGTGGGATTTCATATTGGGAATGTT
TTGGTACTTGCAGGTATCTGTTACCTTGGAAACATCAGAAACGGTTAATCCTCGTGTAATACAT
CCTTCGAGAAGGAGCTCACCCTCAATAACCAAG
Conservation Information
Conserved circRNAs osi_circ_016432
PMCS 0.245575062
Functional Information
Coding potential Y
Potential coding position 24836350-24836307(+)
24836339-24836947(-)
Potential amino acid sequence MFSLDPDRSNDDAGPPLTPKYVEPAGSEGFMRGRSYNIRIDDQVLLRFSPKNSDSTYYFGDMIG
GALTFFHGSGTRRCLEVSVTLETSETVNPRVIHPSRRSSPSITKVWCHLKGS*(+)
MDDDLTANDLASFEVTPHLGY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017