Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17290_circ_g.2 |
ID in PlantcircBase | ath_circ_003052 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5923592-5924610 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G17290 |
Parent gene annotation |
Alanine aminotransferase 1, mitochondrial |
Parent gene strand | + |
Alternative splicing | AT1G17290_circ_g.1 AT1G17290_circ_g.3 AT1G17290_circ_g.4 AT1G17290_circ_g.5 AT1G17290_circ_g.6 AT1G17290_circ_g.7 AT1G17290_circ_g.8 AT1G17290_circ_g.9 AT1G17290_circ_g.10 |
Support reads | 3 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17290.1:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.195574675 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5924388-5924607(+) |
Potential amino acid sequence |
MTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASIALHGGTLVIKCEYAVRGEIVNIAQKL QEDLKTNKDAYPFDEIIYCNIGNPQSLGQQPITFFREVLALCSYTALLDESATHGLFSSDSIER AWKILDQIPGRATGAYSHSQGIKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLI TSEKDGILCPIPQYPLYSASIALHGGTLVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEII YCNIGNPQSLGQQPITFFREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYS HSQGIKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLY SASIALHGGTLVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQQPITF FREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHSQGIKGLRDAIADGIE ARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASIALHGGTL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |