Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0492300_circ_g.2 |
ID in PlantcircBase | osa_circ_024358 |
Alias | Os04circ08232/Os_ciR3022 |
Organism | Oryza sativa |
Position | chr4: 24597384-24598667 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os04g0492300 |
Parent gene annotation |
Similar to DNA-directed RNA polymerase II largest chain. (Os04t0 492300-01) |
Parent gene strand | + |
Alternative splicing | Os04g0492300_circ_g.3 |
Support reads | 2/4/1 |
Tissues | panicle/root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0492300-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005577* osi_circ_014490 |
PMCS | 0.244328998 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24597523-24598664(+) 24598643-24597423(+) |
Potential amino acid sequence |
MCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNH GFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNE IREEAGKPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFR NSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQP GEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKPIEL WTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGK ATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMK IDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKPIELWTGKQLFSVLV RPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGM FSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGK(+) MKSEKKLENLLSFGLVNNSSVC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |