Detail information of Os04g0492300_circ_g.2


General Information
CircRNA Name Os04g0492300_circ_g.2
ID in PlantcircBase osa_circ_024358
Alias Os04circ08232/Os_ciR3022
Organism Oryza sativa
Position chr4: 24597384-24598667  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os04g0492300
Parent gene annotation Similar to DNA-directed RNA polymerase II largest chain. (Os04t0
492300-01)
Parent gene strand +
Alternative splicing Os04g0492300_circ_g.3
Support reads 2/4/1
Tissues panicle/root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0492300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGGTGCACTCCGTTTGCAGCCCGGTTGCAACGCAGCCCAAACATTGGAGCAAAGTATAACT
CGTGTACTGAATGAAATCAGAGAAGAAGCTGGAAAAcctattgagctttggactggtaaacaac
tcttcagtgtgttagtacgtcctaacgcatgtacaaaggtgtttctgaatcttactgttaaaga
gaaaattt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 543
Transcript exons: 24597384-24597597,24597960-24598053,24598433-24598667
CCTATTGAGCTTTGGACTGGTAAACAACTCTTCAGTGTGTTAGTACGTCCTAACGCATGTACAA
AGGTGTTTCTGAATCTTACTGTTAAAGAGAAAATTTATAAGACTCCTAAGGGTTCAACTCTGGA
ACCTGAAGCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGGG
CAAGTTGGGAAGGCCACTTTAGGTAATGGGAATAAGGATGGCATGTTCTCCACTCTTGTAAGAG
ATTATAATTCTCATGCTGCGGCAAGCTGTATGAACCGCTTGGCAAAATTTAGTGCAAGATTTAT
AGGGAACCATGGTTTCTCAATTGGTGTGGACGATGTCCAACCGGGAGAACATTTAAACCAAGAG
AAGAAAATGAAAATAGATGGAGGGTACAAAGATTGCCATGATCTTATTGCTTCCTATTCCAAAG
GTGCACTCCGTTTGCAGCCCGGTTGCAACGCAGCCCAAACATTGGAGCAAAGTATAACTCGTGT
ACTGAATGAAATCAGAGAAGAAGCTGGAAAA

Genomic sequence CCTATTGAGCTTTGGACTGGTAAACAACTCTTCAGTGTGTTAGTACGTCCTAACGCATGTACAA
AGGTGTTTCTGAATCTTACTGTTAAAGAGAAAATTTATAAGACTCCTAAGGGTTCAACTCTGGA
ACCTGAAGCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGGG
CAAGTTGGGAAGGCCACTTTAGGTGAGAATCCCACCCAGTACTGATTCATAGCTAAAACGACTG
CCAACCTGATAATCCTAAGTACTCACTCTGTCCCAAAAATATAGGTACCTCTCTAATCTGAGCT
AGAAAGGCAGCTATATTTTGGGATGGAGGAGTATGCTATATTCTCTTTAGGAGAACATTAGTTT
ATAGGCATGGACTATAAACAATAGTCCTGGCATGGTTTACCCTCTTATGAATCACCACATACAA
TAAATGTTCCTTTAATCAGGTTTGGAAAATGTATTGTTCACTTGTGCTAGTTAGTTGTCCTTGT
TATTTTCATCCTGCTTGTTAAATTTGGAAGCAAACCAAAACAATCTTTAATCTTTTGTTTCCAG
GTAATGGGAATAAGGATGGCATGTTCTCCACTCTTGTAAGAGATTATAATTCTCATGCTGCGGC
AAGCTGTATGAACCGCTTGGCAAAATTTAGGTGAGCTACAAAATTGCGTAATGGACCCATTCTT
TCCTAAATATTAACTAACAAATGCTATGCAATTATTTTTTTGTTCTGTCTTTGTTCCATTAAAG
AATGCGAGAGGGTTAATAGAAATCACTAATAAGTCAAACACTCTGCCTTCTTTTTATTTTATTT
TACGTGAATCTGCCATCTTTTTTATTTGTACGCAAACCACTTTGCCATTTGACACTAATTAAGT
CAGGGAGCTTAGTTGGTGTACACTCGTTCAATTTTATCTCTCTATTATTACCATTTTGCTGAGT
TTCTCATTTGTATTGTTGGTGTTAGATTGTTACATAATTTAGTGCACATTTTTTTTTCTGATTT
GAATTGCATTCATCTTTTCCTGCAGTGCAAGATTTATAGGGAACCATGGTTTCTCAATTGGTGT
GGACGATGTCCAACCGGGAGAACATTTAAACCAAGAGAAGAAAATGAAAATAGATGGAGGGTAC
AAAGATTGCCATGATCTTATTGCTTCCTATTCCAAAGGTGCACTCCGTTTGCAGCCCGGTTGCA
ACGCAGCCCAAACATTGGAGCAAAGTATAACTCGTGTACTGAATGAAATCAGAGAAGAAGCTGG
AAAA
Conservation Information
Conserved circRNAs osi_circ_005577* osi_circ_014490
PMCS 0.244328998
Functional Information
Coding potential Y
Potential coding position 24597523-24598664(+)
24598643-24597423(+)
Potential amino acid sequence MCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNH
GFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNE
IREEAGKPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFR
NSELLSGQVGKATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQP
GEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKPIEL
WTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGK
ATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMK
IDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKPIELWTGKQLFSVLV
RPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGM
FSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL
IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGK(+)
MKSEKKLENLLSFGLVNNSSVC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA