Detail information of Os03g0193901_circ_g.1


General Information
CircRNA Name Os03g0193901_circ_g.1
ID in PlantcircBase osa_circ_018331
Alias NA
Organism Oryza sativa
Position chr3: 4888755-4889140  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method circseq_cup
Parent gene Os03g0193700
Parent gene annotation Terpenoid cylases/protein prenyltransferase alpha-alpha toroid d
omain containing protein. (Os03t0193700-00)
Parent gene strand +
Alternative splicing NA
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0193901-00:2
Os03t0193901-00:2
Os03t0193700-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGGGGAAACGTTGGGCACGACGCGCATGTCCTCTACACGCTCAGCGCCGTGCACGTCCTGTGC
CTCTTTGATCGGCTTGATGCTCTCGATGTCGATAAGaaggactcgttcgagtcgctggtgatgg
agcacatccgactcaacggcgcgtactggggcctcaccacgctcgacctcctccacaagctcca
cgccgtag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 235
Transcript exons: 4888755-4888811,4888962-4889139
AAGGACTCGTTCGAGTCGCTGGTGATGGAGCACATCCGACTCAACGGCGCGTACTGGCTTGGGA
TCCTTGAGGGAGACGTGTTCTTGACTTGATCTGTGCGTTTGGTTCTTCGGATTTGGGTGTTGTA
GGTGGATTGGGGGGAAACGTTGGGCACGACGCGCATGTCCTCTACACGCTCAGCGCCGTGCACG
TCCTGTGCCTCTTTGATCGGCTTGATGCTCTCGATGTCGATAA

Transcript length: 386
Transcript exons: 4888755-4889140
AAGGACTCGTTCGAGTCGCTGGTGATGGAGCACATCCGACTCAACGGCGCGTACTGGGGCCTCA
CCACGCTCGACCTCCTCCACAAGCTCCACGCCGTAGAAGCCGACGAATTCATCGGGTGGATCAT
GTCCTGCTACCACCCGGATTCCGGATCCGCGAGAAGGGGAGGGGGCGGAATTGATTGATTGATT
GTTGGTGGTGATGGTCTTGGGATCCTTGAGGGAGACGTGTTCTTGACTTGATCTGTGCGTTTGG
TTCTTCGGATTTGGGTGTTGTAGGTGGATTGGGGGGAAACGTTGGGCACGACGCGCATGTCCTC
TACACGCTCAGCGCCGTGCACGTCCTGTGCCTCTTTGATCGGCTTGATGCTCTCGATGTCGATA
AG

Genomic sequence AAGGACTCGTTCGAGTCGCTGGTGATGGAGCACATCCGACTCAACGGCGCGTACTGGGGCCTCA
CCACGCTCGACCTCCTCCACAAGCTCCACGCCGTAGAAGCCGACGAATTCATCGGGTGGATCAT
GTCCTGCTACCACCCGGATTCCGGATCCGCGAGAAGGGGAGGGGGCGGAATTGATTGATTGATT
GTTGGTGGTGATGGTCTTGGGATCCTTGAGGGAGACGTGTTCTTGACTTGATCTGTGCGTTTGG
TTCTTCGGATTTGGGTGTTGTAGGTGGATTGGGGGGAAACGTTGGGCACGACGCGCATGTCCTC
TACACGCTCAGCGCCGTGCACGTCCTGTGCCTCTTTGATCGGCTTGATGCTCTCGATGTCGATA
AG
Conservation Information
Conserved circRNAs osi_circ_004601* osi_circ_013997
PMCS 0.461956606
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016