Detail information of Os06g0499900_circ_g.8


General Information
CircRNA Name Os06g0499900_circ_g.8
ID in PlantcircBase osa_circ_030975
Alias NA
Organism Oryza sativa
Position chr6: 17602695-17605153  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0499900
Parent gene annotation Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PD
C (Fragment). (Os06t0499900-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGTTGCTATATTTTATGACGGAGGGAGCACTGATTTTAAGGAAATAACATGGAAATCTTGCT
TCAAGCCAAAGACAAAGCTCAAACAAAGGACATTACgtgtatattccatggcatattccctagc
gtattccttgtgtacattccatgggtctctagtctatttccgatgccctaggaattaagatgca
tatcctcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2459
Transcript exons: 17602695-17605153
GTGTATATTCCATGGCATATTCCCTAGCGTATTCCTTGTGTACATTCCATGGGTCTCTAGTCTA
TTTCCGATGCCCTAGGAATTAAGATGCATATCCTCCAACACAGGTTAAACAAATATTCACCATA
AGAAAAGATAGTGTCACAAAAGAAAAAAAAAAGGCAAGTGTGAAAAGCTCATAACAAAGCTAAA
TCCACAATACATCTAGGAGGCTAGGAGAAGAACATCAATGTTTCATTTTGTAAAATGTAAAGCA
TGTTAGCCAACCATGGTATGCAGGTAGTTACACATAACTGTGATCTGTCATCTGTCATGTTATT
CTCATGCTGTAATGGAATAGATTAAACAAAATTGCACTGTGAACATTCTGCCCATTTCCATGTC
ATATGACAAAAGAGGGAAATAAAGGAATATATCTTCTCAAATTCGCTTCAACATAGAAAAATAG
ATTGGCTAAACTTGTATGGATGAACAGCAACATGTTTGGATTAGTTAACCAGTAAATCACACAT
TATGTTCTTTCAAATGGCACGCTGGGAATGGAATTTGATTACGCAGTAGCTGTTGGATAGGATA
ATGGCTCCGCAACGGTATATTGGACGAAACAATGAGCACTTTTGTCAGATCACCGTTTCACTAA
CATTAGGTCTCCATATCCGTTTCCCAGAGCCTCAGCATATCCCATTCCTCCAATTAAACATGGG
TGCAGATCCATTAGAACCATCATTTCCCAACCTCTAACCCACAATCCAAATGGCATAAAGAAAC
AGGCAAAAGATTTTTTTCGAGAAAAAAATAGGCAGAAGGGTTATAAGACGTACATATAAAGTGG
AAATTAGAAAAATATGTAATATCTCAATGCTATTCTGGGAGAATCATAACATGTTCTATCACCA
AATGGGAATTCTAATGATAAGCACTTATCTGTAGCTACAAAAAACACTAGACTCATGCTTAGCA
ACGTATATGTACAAGCTAGGAAAAACAACATTTAGTTTGTTACATACTGGATAAATACTACTGT
ATCCATTCCAAAATATAAGTACTTCCAGAGTTTCACAGAGATTAAGGAGGGGTGAAATTAAATG
GGGGATAATTGTTATTGGTTGAGATGAGGGAGTAAGCAGAGAAGTTATTTTTTTTCCTACAAAA
CACAGGAGAACCGCAGTTCATTATAAGAAAGAAAAATACAAAAGGGCGGAGGGGGATCAAGAAG
GGGCCCCTAAAAAACACACCCTCAAAACTAGAAAACGCACCACAGTGTTAATTGACCAGATCAC
CCAGAAACAAACTAAGGGCCTGTTAAGTTGGCAACCTGAGCATTATCCCAAAAAAAATAGGTGG
CTGAGTGTTGCGTAGGTTTGGATGATTCATGCATGAGGCATATGCTTGAGAAAAATATGTTTGG
TTGTAAAAACAGATTATCTATATCATCTTCTTTGTAAAAACTATGTTTAATCGTAGATCCATAT
ATGTACATGGAAAATGTAAGTATTAATTAGGTATTATTTTTTTCTGTAGTATTTTAACCAGTCC
AGTACACTTCCCAATAAAAAGCTATTGTTCTAGGTGCATGATACATATAAAAGAAAGCAACCAG
CTGCAGCATGAGATTAGTCAACTACAGTAGTACTCATGGAAGCACTCTGCTCAGCCTGCCGCTG
CATGGAGCTCAGGCCACCAAATTTCATCGCCTCAGTCAGGCTAATGAATCTGCCGGAGAGCTCA
GGCCAGGCTGGGTATGAAGGAGTTTAGGCACCAACCAAACAAGTTTGTTTTCTCAGGCTTGGCT
CTGGCCAGGCATATTTGCATCAGGGTGGCAACTAAACAGCCCCTATGCGTCCAGGGTAAGAAAC
CGTAGGAGGAGCACATGGTCTCCAGCTAAACACCAAAGGCTACTCTCATTTGCCACTGTTTATA
GCACCAGCACAATATTTGGACTGGAGCCATTGAAGACGCAGTCATTTCAGTGCTTAAGCTACTA
GAATAATAACGAGTTCAGTCCCTTTTTCTGGGACAAATTTTGAATGCTATAAGTTGCTATATTT
TATGACGGAGGGAGCACTGATTTTAACTAGTTTTTACAAAGAAGATGATATAGATAATCTCTGC
TATAGTTCAGTCCCTTTTTCTGGGACAAAGAATGCTATAAGTTGCTATATTTTATGATGGAGGG
AGCACTGACTTTAACTAGTTTTTACAAAGAAGATGATATAGATAATCTCTGCCATAGATAACTA
GTTTATAGAAGATGATAATACCTAATTAACTAGTTTTTACAAAGAAGATGATACAGATAATCTC
AGATCTACGATTAAACGAGTTCAGTCCCTTTTTCTGGGACAAATTTTGAATGCTATAAGTTGCT
ATATTTTATGACGGAGGGAGCACTGATTTTAAGGAAATAACATGGAAATCTTGCTTCAAGCCAA
AGACAAAGCTCAAACAAAGGACATTAC

Genomic sequence GTGTATATTCCATGGCATATTCCCTAGCGTATTCCTTGTGTACATTCCATGGGTCTCTAGTCTA
TTTCCGATGCCCTAGGAATTAAGATGCATATCCTCCAACACAGGTTAAACAAATATTCACCATA
AGAAAAGATAGTGTCACAAAAGAAAAAAAAAAGGCAAGTGTGAAAAGCTCATAACAAAGCTAAA
TCCACAATACATCTAGGAGGCTAGGAGAAGAACATCAATGTTTCATTTTGTAAAATGTAAAGCA
TGTTAGCCAACCATGGTATGCAGGTAGTTACACATAACTGTGATCTGTCATCTGTCATGTTATT
CTCATGCTGTAATGGAATAGATTAAACAAAATTGCACTGTGAACATTCTGCCCATTTCCATGTC
ATATGACAAAAGAGGGAAATAAAGGAATATATCTTCTCAAATTCGCTTCAACATAGAAAAATAG
ATTGGCTAAACTTGTATGGATGAACAGCAACATGTTTGGATTAGTTAACCAGTAAATCACACAT
TATGTTCTTTCAAATGGCACGCTGGGAATGGAATTTGATTACGCAGTAGCTGTTGGATAGGATA
ATGGCTCCGCAACGGTATATTGGACGAAACAATGAGCACTTTTGTCAGATCACCGTTTCACTAA
CATTAGGTCTCCATATCCGTTTCCCAGAGCCTCAGCATATCCCATTCCTCCAATTAAACATGGG
TGCAGATCCATTAGAACCATCATTTCCCAACCTCTAACCCACAATCCAAATGGCATAAAGAAAC
AGGCAAAAGATTTTTTTCGAGAAAAAAATAGGCAGAAGGGTTATAAGACGTACATATAAAGTGG
AAATTAGAAAAATATGTAATATCTCAATGCTATTCTGGGAGAATCATAACATGTTCTATCACCA
AATGGGAATTCTAATGATAAGCACTTATCTGTAGCTACAAAAAACACTAGACTCATGCTTAGCA
ACGTATATGTACAAGCTAGGAAAAACAACATTTAGTTTGTTACATACTGGATAAATACTACTGT
ATCCATTCCAAAATATAAGTACTTCCAGAGTTTCACAGAGATTAAGGAGGGGTGAAATTAAATG
GGGGATAATTGTTATTGGTTGAGATGAGGGAGTAAGCAGAGAAGTTATTTTTTTTCCTACAAAA
CACAGGAGAACCGCAGTTCATTATAAGAAAGAAAAATACAAAAGGGCGGAGGGGGATCAAGAAG
GGGCCCCTAAAAAACACACCCTCAAAACTAGAAAACGCACCACAGTGTTAATTGACCAGATCAC
CCAGAAACAAACTAAGGGCCTGTTAAGTTGGCAACCTGAGCATTATCCCAAAAAAAATAGGTGG
CTGAGTGTTGCGTAGGTTTGGATGATTCATGCATGAGGCATATGCTTGAGAAAAATATGTTTGG
TTGTAAAAACAGATTATCTATATCATCTTCTTTGTAAAAACTATGTTTAATCGTAGATCCATAT
ATGTACATGGAAAATGTAAGTATTAATTAGGTATTATTTTTTTCTGTAGTATTTTAACCAGTCC
AGTACACTTCCCAATAAAAAGCTATTGTTCTAGGTGCATGATACATATAAAAGAAAGCAACCAG
CTGCAGCATGAGATTAGTCAACTACAGTAGTACTCATGGAAGCACTCTGCTCAGCCTGCCGCTG
CATGGAGCTCAGGCCACCAAATTTCATCGCCTCAGTCAGGCTAATGAATCTGCCGGAGAGCTCA
GGCCAGGCTGGGTATGAAGGAGTTTAGGCACCAACCAAACAAGTTTGTTTTCTCAGGCTTGGCT
CTGGCCAGGCATATTTGCATCAGGGTGGCAACTAAACAGCCCCTATGCGTCCAGGGTAAGAAAC
CGTAGGAGGAGCACATGGTCTCCAGCTAAACACCAAAGGCTACTCTCATTTGCCACTGTTTATA
GCACCAGCACAATATTTGGACTGGAGCCATTGAAGACGCAGTCATTTCAGTGCTTAAGCTACTA
GAATAATAACGAGTTCAGTCCCTTTTTCTGGGACAAATTTTGAATGCTATAAGTTGCTATATTT
TATGACGGAGGGAGCACTGATTTTAACTAGTTTTTACAAAGAAGATGATATAGATAATCTCTGC
TATAGTTCAGTCCCTTTTTCTGGGACAAAGAATGCTATAAGTTGCTATATTTTATGATGGAGGG
AGCACTGACTTTAACTAGTTTTTACAAAGAAGATGATATAGATAATCTCTGCCATAGATAACTA
GTTTATAGAAGATGATAATACCTAATTAACTAGTTTTTACAAAGAAGATGATACAGATAATCTC
AGATCTACGATTAAACGAGTTCAGTCCCTTTTTCTGGGACAAATTTTGAATGCTATAAGTTGCT
ATATTTTATGACGGAGGGAGCACTGATTTTAAGGAAATAACATGGAAATCTTGCTTCAAGCCAA
AGACAAAGCTCAAACAAAGGACATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.198669927
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017