Detail information of BGIOSGA015686_circ_g.2


General Information
CircRNA Name BGIOSGA015686_circ_g.2
ID in PlantcircBase osi_circ_005298
Alias 4:1368315|1369759
Organism Oryza sativa ssp. indica
Position chr4: 1368315-1369759  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015686
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015686_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA015686-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTCCACGGCCTCGTGCCAATCCAACCGTCCGTTGGAGGAGAACTCAGGGCCGATGAGCGGC
TGGATGCGGCGTAGGAGGGCGTGACGCTCGCCGTCGcgttgagctcatgtagtttattgctgga
catgtcaataacctgcagggacgtcaaattggaaatccagcctgtggtggtgatctcattcccg
gctaggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTGAGCTCATGTAGTTTATTGCTGGACATGTCAATAACCTGCAGGGACGTCAAATTGGAAAT
CCAGCCTGTGGTGGTGATCTCATTCCCGGCTAGGTGCAGCTCCGTAAGTGCGGTTAAGTTGTTG
AGAACAGCACCGACAACCATGTCTGTCAGCAGAAATAGTGGTATATGTTAATGTCCTAATCATT
AGTTAATCATTTTTATTATATAGAAGACGCACGTATATGTGTGTACTTAGATTACATACACACA
AAGTGTATGCTCTTAGTCCCTCCGTCATATAAAATAAGAGATTTATCTATTCCATTATCTAAAA
ATATAAAATAAGAAAATATAAAATAAGAGATTTTGGAGGGATATGACACATCCTACGACTATGA
ATCTGGACATGCTCATGTCCAGATTCATAATCTTAGTGTCACATCCCTATAAAATCACTTATAT
TACGGGCCGGGGGAGTATATCTATTAACATATACCATCCTCATTCTTTAATATATAACGCTATG
ACATTTTATAAACGTTTAACCATTTAAAAAATTTGTGTAAATATAAAAAATTAAATCATGCTTA
AAGAAGATTTGACAATAAATTAAGTCTAAAAAAATAAATGATAACTGAACATTTTTTTTAGAAA
ATCGAATGATCAAAAATATTAAACAAGTCAATAGCTTGATATATTTAAGAACGGACGAAGTAAT
GAAAGAGGCTTAAGACCCTTTTTAGATGGGACTAAAAACTTTTAAGTACCTGTCACATCGAATA
TTTGAATACTAATTATAAATATTAAACGTAGACTATTAATAAAACCCATCCATAATCTTGGACT
AATTCGTGAGACGAATCTATTGAGCCTAATTAATCCATGATTAGCATATATGATGCTACAGTAA
ACATTCTCTAATTATTGATTAATTAGGTTTAAAAAATTTGTCTCACAAATTAGCTTTCATTTAT
GTAATTAGTTTTGTAAGTAGTCTATATTTAATACTCTACAGAGACTCGCTAAAATTCAATTGAA
AGCGTGACATGTTGTCCCATCAACTTATTCCCAAATGGAAATCTTTATAATCCACTAAATCTAC
TATTTTATATATGAATTTAGACATATTTGTAAATATAAACTTAGTATTAACTTACCTGAGCGAT
TAGCAGCTGAAAAGCTAGTGATTTGATTGCCGGAGAGGTCGAGCTTCTCTAGCGCCGTGAACGG
CGCAAGCACGGCGGCGTCCACGGCGCCGGCGATGCCAACTCCGGGGAGCGACAGCGACACAACG
CGGCGGCCACCAGCTGCTTCTCGTCGTCGGCCGGCGACGCTGCATGTGACGCCCTCCCAGCGGC
AGCAGTCCACGGCCTCGTGCCAATCCAACCGTCCGTTGGAGGAGAACTCAGGGCCGATGAGCGG
CTGGATGCGGCGTAGGAGGGCGTGACGCTCGCCGTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2931
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021