Detail information of Zm00001d018724_circ_g.1


General Information
CircRNA Name Zm00001d018724_circ_g.1
ID in PlantcircBase zma_circ_002433
Alias circ1546
Organism Zea mays
Position chr7: 3129996-3134656  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d018724
Parent gene annotation transducin family protein / WD-40 repeat family protein
Parent gene strand -
Alternative splicing Zm00001d018724_circ_g.2 Zm00001d018724_circ_g.3
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d018724_T012:11
Zm00001d018724_T010:11
Zm00001d018724_T001:11
Zm00001d018724_T008:11
Zm00001d018724_T011:11
Zm00001d018724_T005:11
Zm00001d018724_T003:11
Zm00001d018724_T007:8
Zm00001d018724_T009:11
Zm00001d018724_T002:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAGACCTGAAGAATGTGCATCCACAGAATATACAAGAGAAGAATGTCCGATCATGTCCAGC
AGGGGCTGACCTGACAACGCCCATAACTTGACAGTGcctggaaacatcatttgtggaggccaag
acttcaatatctttaccaacaatgtcatatcagcatctgcaagcttacttgtgtgataaaatga
tgtctctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGAAACATCATTTGTGGAGGCCAAGACTTCAATATCTTTACCAACAATGTCATATCAGCAT
CTGCAAGCTTACTTGTGTGATAAAATGATGTCTCTTTCAACACGTTCACTATGGCAGGTAATCT
TGACATCTCCGTCTCAGACAGAGATAATTGTTTCTGTTCCTGAATACAGTTAAGTTAAAATTAA
GACATGTGTAAGAATCTCGGATAAACTTCTTTTCTTTTAGAAATGATTATGATTCTAAACAACC
CAGGTGTAGGTATCACCCACTAGAGTGCCTGTTAGGCATTGGTCGAGGTACACCATAAAAATAT
TGTGTAACTAAAGGTGTTCCAAAGTCTAACCACAACAGCCAAAATTAAATGCTTTGAGCAAGAT
CCTAGACGAACTATTGTAAATAATGTGTAACTAAAGGTGTTCCAAACACAAACTTAGTTTAGTC
CACAACATACTAAAAGCGCAAAGAACAAGTCAGCAAGTAATTTAGCAGGTTACTTCAGGTTAAT
AGATATATGCTATTCATGCTTCTCGTCAGCATTCTATGTTAACCAGCTTGTTTAGGATTTATAA
CAAACTTCAATCAATTCCTTCACTCGGGTTAGTTATTTATTTGCTGTCCCCATGACTTACACAT
CTTCGATGCAGACCATGTCCTCCCTTTCAACATACTTCTATACAATATACTTCTCAGTGCAAGT
CACATGTGTAGGCGTGCAGCTCTAAAGACAACAAAGTCAGTCAGCATGCAGGGGACACCCACTG
CTGAAAACTCATTGACATAAGACTAATGCATTGGAATTGGAATAGATCTAAAAGCACATGAAAT
GATGTAAGCAAAACTGCATTTAGGTTCTGGGAAGAAATAATAATATGTTAATTTTTGGAATAAA
CAAAACGTGCCAGGAAATAAGTTTTCAGATTACCGAGTCAGATGAAAGTTTTGAATTAAACTCT
GCAACTTTCTTTAGGATTCCATCAAACTGAGCTGTCTCAAATGACAGCATTCCACTCTGCAAAT
CAAATAAGCAGGCTCCGGGTTAATTCACAAAAGTTGTAAAATAACTCATGTATTATTTTCATGG
CAACTTGCTTCTGGTTTAAAAAATATAAAGCATCAATCAACAGTTAATGTAACAAGATGAGGCA
GATGATTGGATAAAAATTTTGATCTATACTGCTTTATTGTTTTGCACAAGGCTTTGTTTGATTT
GGCAAGACAATTAGTTCATGTTACATATATATTATATTAACATAATCAATATTGTTAGAAGGAT
AGGTCTGGCACAGTGATGAGAAGCCTTTCCACTGAGCCAAAGGTCCTGGGTTCTCGGTTCAATG
CATCCTCTCTGCAAAAATGCAGGAGTTAGGCTTGGCTCGGTTATTCCTTCCCTAGACCCCACTC
ATGTGGTAACCGCCAGCACCAGATCTGTCCAACATAATCAATATTGTTGAAAGTTCTGTGAATC
TATCGGAATACAGTCCTGTAACTTAAAATCATGTTCGGTTGTAATGCTTGTATGCAAGACATGT
CATTTACCCATAAAGTGGGCAGACATCTAATTAACAACAAAGGCAACAGAGGAAACAAGTATCC
ACCACTACCCAGGGATGCAAAGGGGATAATTAATTTAGCCAACCATTGTCACCAAACTCTTACA
CTTGCAAGTAAGCGTCACCAATACAACTCAGTTTCACAGATCAAGTGTCTTTCAATTGAGTTTG
AACTTCAAGTATCAGTGTTAATTACAAAAAAGAAAAAAATGTAACAAACATCAAGATCAGTAGT
ACCTTCGGTATGTGCTTGAAAATTGGTTCCGGAGTATTACCTGCAAAATAAGTATATATTATGT
GATTCAGGGTATATCCCAAAAACTACATCAAAGGGTTGCAATTTAATATAGAGAGAAAGGGGAA
AAGAACCAGCTCAATTTCCAGGATTTAGGCATGGATATTGAATACGTACCATTGGATGATGATG
ATGGTTGCCCAGGCACATATGCATTGGCTGATACAGAATCAGTTTGGTTGTCAGCAGCAGCAAC
CAACAGGTAAAAATGTAACAACAACAACAACAACAACAAAGCCTTTTTTGTCCCAAGCACGTTG
GGGTAGGCTAGAGATGAAACCCCGTATGAAAACCTCAGAGCTCAACCCCCAAAGAACAGAAAAG
GGAAACAAAGGCAAAGGAGAACCGAAAACAACGAAACGGGGAAACACATAAAAGAGATAAAACC
CACAAGGACCAGCAAGATCTAAAATGGACACAAGAAAAGGTCAAACGATTAAGGAGGAAAAGCG
AAACTATCAATCAGGGTTCTGGCACAAAAAAACAGCATGCTTACCCCCAGTATAGGGATCCCGA
AAAGATGGATCTGGAACAAAGTTGTTCTGGCCAGAATTCTGCAGTATAAATTCTACAACCTGTT
GGCGATATGTCAAAGGCAGATTTTCTTTCAGGAGCCACTTGTCCGCGACTGTGTATGGGTCATC
TACAATGAACACGAACATGAATGTAACAGGTGCATATGATAACTTTGAGAATAAAAGCTCTCAC
GTTCATGCACATGAAAGACAGAGATCCATGATGTATGGACATTTACATATACCATATAAAACCA
AAGCATATGAATCATAATACTAGTTGGTTTACTCTAGAATCAATGGCAGATAAAATCATAAAAA
ATAGGAATACAGTTGTGTTATACCTGAACGATTATAGGGTAGTTTTCGTATGGGTTCTCCATCT
CCAATATCAACATTAAAAACTGCAAAAAAAAATTAGAATATCGTAAGAAAACAAAAGGTTAGCG
CAAAACACATACAATTGAACTCAACTTACCAAAATCATACCGAACACCATCATGAACTTGGCCT
TGAGCAGCTTCACCAGGTCCATCCACTACTTCACCAATCTAGCAATTTTGTTGGGCAAAAAATG
GGATTAGAATAACTCAAAATTAAAGGATATAAACAAATAAATGCAGTACCATGTCAAGGACAGA
TGGCTAACACTACCAGAGTGCATAAATATATCACGATGCGATAAAATAACCACAATTAATTAAG
TCAAAAACATAAACCATTACAGCTAGATATTAAATTATGCTGTGCGAATGATCATCAAACAACT
AGCGGCCTGCTAGTTAAACAGCTCTATCAAAACCAAGTAGCAGATTCTCTTATGTGAACGGGAC
ATTGGGTAAATATAATGTGAAGCTGAAAAAGGTCTAAAGCAGAAAGGGGCTTACTTTGTCCCAT
TTTAACTCTGCTGAATTCCATGAATATGCAACACCATTATCCCCTTCTCGAACGATTAATGTTT
GTCCATCGGAGTTCCCTGCTCGAAACACACTAAATTAAGACGGAATTTGAGCTACTTAAGGTTA
AACACCACACGATTCCACTGAAAATTAGCTTCCACACTGCTCCCTATTCTTACATGCTAAACAA
TGATCAAGGCAACAGACTATAAGAAGGCTCTAAATATTTATAGAAAATAGAGATTTTGAAGAAA
AAATACAGAAATTTCACATGTATTTTAAAATAAAAATGTATATTGAACCCGTTTAATAACTAGC
AAACCAGAATATATACTTAGCACTGGGTGTTATCTACATGTCAATAATATAAGGATAAAAAATG
TGATATATAACCTGGAACTTGCAGCGCCTCCACACCTGGTAGATCCATCAACTTAAGTCCACCA
ACAGTCTTTCTGTAAAGGCAAGAAATAAGGATATCATGTGTGAATAATTCCAGGGCTCCCATTT
TCAGAGAATAGCAACAGTAGATAGACCACAGTCACTATCTATATAAGGAGATGACTGAACAATC
CTAGTGATCCAATTTTCAGAAATAACATAATGATTGTCCCACGAGTAATTGTACATAGACCATG
GTCAACTGGTATCAAAATAAGCATATGCTCTAATATATAAGAAATGATAAAACCTTGCAGAAGA
TAAGAAAATAACTTATGAAACCAGAGATGCCAACCTGCTAAGTGTGTATTGAGAAATAAGATCT
GTATAAGCTGCAATTTCCTCATCACTGCAGAACCTGTTAGAATCTGCTGTCCATATCCTTGTAG
TGCCATCAGAACAAGCAGTTACAATATCTCCATTTCCCAAGAACTTAGCATCCCATATACATCC
TGGGTGTTCAATGCTTTGAACGCAGACACCATCTGCATTTTTACTCAAAAATCAGAGAATGGAA
GTACATTGAGAACTTGCTGTACTACACACGTTTTGTTTTTACTGATAGAATTTTCCTTCTCTAC
TGCACAAGTTCAACAGGTGAGTATATAAGTTTCAGTTTCAGCATACTGGGCAGAAACAGAGTGA
GGGGAAGTGTTTAAAATTCAGTTAGCCACAACTTTACATTTGTTTAGACAAGACAGTTTGTAGA
ATGGATCATAGCCTAACTTAGTGAGATTCCACGAGTTGCTCAGAGAATGTGTACAAATTCAACA
TGAGAAATGCTGATGCATTTATATAATACAAAATATATCACCTTTCCATATCTTCAAAGAGCGA
TCCTCACTACCACTAGCAATTAGACCTGAAGAATGTGCATCCACAGAATATACAAGAGAAGAAT
GTCCGATCATGTCCAGCAGGGGCTGACCTGACAACGCCCATAACTTGACAGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.003989961
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b