Detail information of Zm00001d024583_circ_g.5


General Information
CircRNA Name Zm00001d024583_circ_g.5
ID in PlantcircBase zma_circ_006226
Alias ear_test_circ_000892
Organism Zea mays
Position chr10: 79183056-79183224  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d024583
Parent gene annotation RNA polymerase II large subunit family protein
Parent gene strand +
Alternative splicing Zm00001d024583_circ_g.3 Zm00001d024583_circ_g.4 Zm00001d024583_circ_g.6 Zm00001d024583_circ_g.7 Zm00001d024583_circ_g.8 Zm00001d024583_circ_g.9
Support reads NA
Tissues ear
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d024583_T001:1
Zm00001d024583_T010:1
Zm00001d024583_T007:1
Zm00001d024583_T011:1
Zm00001d024583_T003:1
Zm00001d024583_T008:1
Zm00001d024583_T006:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCATACAGCCCCACATCACCCGCTTACAGCCCCACATCGCCATCCTACAGTCCAACTTCACC
ATCTTATAGCCCTACATCACccaagctacagccctacatctcctagctatagtcctacatcacc
aagctacagccccacctcaccagtttatagcccaacctcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAGCTACAGCCCTACATCTCCTAGCTATAGTCCTACATCACCAAGCTACAGCCCCACCTCAC
CAGTTTATAGCCCAACCTCACCAGCATACAGCCCCACATCACCCGCTTACAGCCCCACATCGCC
ATCCTACAGTCCAACTTCACCATCTTATAGCCCTACATCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.287654051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018